Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g940 ATGCCGGACTACGAAGGCAGATACGAAGGTAACGGTAATGGAGAGGATCTCGACAATTATGGTTCCTCTCCTCAACCACGGGGTAGTAGCCATGGCGGTCCCGATGACTATAGCGATTCTAAATCTCAGCATGGTTCTCGTGAGTATCAAAGGGAGTCTTCCAAAAGCAGGGAAAGGGAAAGAGAGAAAGGGCGTGACAAGGATCGTGAGAGAGACAGGGATAGGGAAAGGGACAAGGAGAGGGACAGGGACAGGGACAGGGACAAGGAGAGGGACAGGGACAGAAGAGACCGCTATAGGGATCGGAGTGACAGAAGGGAACGAACCAGAGATAGAGATGATGATGATTTCCACCGCAGCCGAGATTATGATAGGCGAAGGGATTTTGACAGGGATAGAGATGACAGGCATAAGCGCAGGTCTCGTTCTCGTTCCAAGGGTAGATCCGAACAGAGATCAAGGTCAAGATCTGCCTCGCTGTCAAAGAGCAAAAGGGTCAGTGGTTTTGACATGGCGCCCCCTGCTTCTGCAATGTTAGCCGGTGCTGCTGCTGCTGCAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGA 591 52.28 MPDYEGRYEGNGNGEDLDNYGSSPQPRGSSHGGPDDYSDSKSQHGSREYQRESSKSREREREKGRDKDRERDRDRERDKERDRDRDRDKERDRDRRDRYRDRSDRRERTRDRDDDDFHRSRDYDRRRDFDRDRDDRHKRRSRSRSKGRSEQRSRSRSASLSKSKRVSGFDMAPPASAMLAGAAAAAGNVGLLAPLC* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18001252 18005182 + Vvi4g940 Vvi4g940 785719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g940 196 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 188 - -
Vvi4g940 196 PANTHER RNA-BINDING PROTEIN 1 188 - -
Vvi4g940 196 MobiDBLite consensus disorder prediction 1 172 - -
Vvi4g940 196 MobiDBLite consensus disorder prediction 37 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g940 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - vvi:100241076 95.5153
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g940 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .