Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g942 ATGTCATGTTCTCTTGCCCGCCACCTCCGCCACGTCCGTCACCTCTCAACTGCCGCCGCCGCCGCCGCCTCCACCGCTGCTGCCTCTGCCTCTTCCTCGTCCATATCCGTTTCCAGAGCTAAATCGATACTCCGATCAGAATTTGATCCAGACAGAGCCTTAGAAATCTACTCCTCCGTTTCCAAACACTACACCTCCCCACTCGCCTCTCGCTACGCCCAAGACCTCACCGTTAAACGCCTTGCCAAGTCTCGCCGCTTCGCCGATATCGAGACCCTGATCGAGTCCCACAAGAATGATCCCAAAATCACCCAAGAACCTTACCTTTCCACCTTGATTCGATCCTATGTACCCAAATTCTTCGAAGAAATTCCCAGAAGGTACGGTGTTTTGCCAGATAAGATTTCTTATGGTATATTGGTGAAATCATACTGTGAATCGGGTTTGTCTGACAAAGCAATTTCGATGTTGAAAGAAATGGAAGAGAAGGGTGTTGAGATTACAGCAGTTACGTTCACGACGATATTGGATGCTTTGTACAAGCAGGGGCAGAGTGATAGAGCTGAGAAAGTTTGGCATGAAATGGCGAAAAAGGGGTGTTTGGATGTTGGGGCCTATAATGTGAAGATTATGTTTGCCCATGGCGGAGACCCCGAAAATGTGAAGGCGTTGATCGATGAGATGAGCAATGCTGGGTTGAAACCGGACACCATCAGTTACAATTATTTGATGACCAGTTATTGCAAGAGCGGGATGGTGGATGAGGCAAAGAAGGTTTATGCAGAGTTAGAGGAAACTGGGTGTCATCCCAATGCAGCCACATTTAGGACTTTGATTTATTATTTATGTCGAAGTGGAGACTTTGAAACGGGGTATAAGGTTTTTAAGCAGAGTGCTTTTAGGCGTAAGATACCAGATTTTGGTACATTGAGGCATTTGGTGGAAGGATTGGTGCAGAAAAAGAAAACCAAGGAGGCCAAAGGATTGATCAGAACGGTGAAAAAGAATTTTCCTGCAAATTTCTTGAATGTGTGGAGGAAGCTGGAGGAGGATCTTGGTTTAGCTGGCGTAGATTCTTCTCCGGCTGCTGATGATGTCCAAGAGGCTACTTCATAG 1116 46.77 MSCSLARHLRHVRHLSTAAAAAASTAAASASSSSISVSRAKSILRSEFDPDRALEIYSSVSKHYTSPLASRYAQDLTVKRLAKSRRFADIETLIESHKNDPKITQEPYLSTLIRSYVPKFFEEIPRRYGVLPDKISYGILVKSYCESGLSDKAISMLKEMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGCLDVGAYNVKIMFAHGGDPENVKALIDEMSNAGLKPDTISYNYLMTSYCKSGMVDEAKKVYAELEETGCHPNAATFRTLIYYLCRSGDFETGYKVFKQSAFRRKIPDFGTLRHLVEGLVQKKKTKEAKGLIRTVKKNFPANFLNVWRKLEEDLGLAGVDSSPAADDVQEATS* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18009480 18011045 + Vvi4g942 Vvi4g942 785721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g942 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Vvi4g942 371 Gene3D Tetratricopeptide repeat domain 7 201 IPR011990 GO:0005515
Vvi4g942 371 TIGRFAM PPR: pentatricopeptide repeat domain 135 168 IPR002885 -
Vvi4g942 371 TIGRFAM PPR: pentatricopeptide repeat domain 274 297 IPR002885 -
Vvi4g942 371 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Vvi4g942 371 TIGRFAM PPR: pentatricopeptide repeat domain 170 200 IPR002885 -
Vvi4g942 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Vvi4g942 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Vvi4g942 371 SUPERFAMILY HCP-like 177 341 - -
Vvi4g942 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vvi4g942 371 Pfam PPR repeat family 235 284 IPR002885 -
Vvi4g942 371 Pfam PPR repeat family 132 181 IPR002885 -
Vvi4g942 371 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 6 118 - -
Vvi4g942 371 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 180 361 - -
Vvi4g942 371 Gene3D Tetratricopeptide repeat domain 202 352 IPR011990 GO:0005515
Vvi4g942 371 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 180 361 - -
Vvi4g942 371 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 6 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g942 - - - vvi:100246188 684.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28