Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g943 ATGACGACTCGAATCGCTCCGGGCGTCGGAGCCAACTTGCTAGGCCAACACTCCGCCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTGTTAATGTATATGTTCCCAAAGATAGAGTGACAAATCTGCACCAAGGATATGGATTTGTAGAATTTCGAAGTGAAGAGGATGCTGATTATGCAATTAAGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGAAACCTTGATCCTGATGTGGATGAGAAACTTCTGTATGATACTTTCAGTGCATTTGGAGTCATTGTCACAAATCCCAAGATAATGAGAGATCCTGATACAGGAAATTCTCGTGGTTTTGGTTTCGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGTCAGTATCTCTGCAACCGGCAGATAACTGTGTCCTATGCATACAAGAAAGACACTAAAGGGGAGCGGCATGGTACCCCAGCAGAAAGGGTTTTGGCTGCAAGCAATCCAAGTGCTCCAAAGAGCAGGCCCCACACCTTGTTTGCGAGTGGACCTCCTACACTTCCCAATCCTTCCCACCCATGCAGCTAG 717 45.89 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNPSHPCS* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18012559 18022101 + Vvi4g943 Vvi4g943 785722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g943 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Vvi4g943 238 CDD RRM2_SF3B4 111 193 IPR034159 -
Vvi4g943 238 CDD RRM1_SF3B4 28 100 IPR034158 -
Vvi4g943 238 Gene3D - 16 106 IPR012677 -
Vvi4g943 238 SMART rrm1_1 113 187 IPR000504 GO:0003723
Vvi4g943 238 SMART rrm1_1 26 99 IPR000504 GO:0003723
Vvi4g943 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Vvi4g943 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Vvi4g943 238 PANTHER TRANSFORMER-2-RELATED 1 234 - -
Vvi4g943 238 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 234 - -
Vvi4g943 238 Gene3D - 107 204 IPR012677 -
Vvi4g943 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vvi4g943 238 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Vvi4g943 238 MobiDBLite consensus disorder prediction 194 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g943 K12831 SF3B4, SAP49; splicing factor 3B subunit 4 - vvi:100251324 470.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g384 Vvi4g943 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007918 1 1 2 1 1 1 2 1 1 1 0 1 2 1 1 3 1 2 1 1 1 1 1 0 1 1 1 3 1 1 36