Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g944 ATGATGAGCAAAGAATTAAAGCAAGTTTTGATCCCTGGTCCACTGATCATTGGTGCTGGGCCTTCAGGTCTTGCTGTAGCTGCATGCCTTAAAAAAAGAGGAGTACCCTCGTTGATCCTGGAGAAGGAGAACTGTATGGCCTCCTTATGGAATCTGAAGACATACGACCGTCTAAGACTCCACCTCCCAAAGAAGTTCTGTGAACTTCCTTACATGAAATTTCCTTCAGAATTTCCAGCTTACCCGACAAAGCAGCAGTTTATAAGTTACTTAGAGGATTATGCTAAAAGCTTCTCAATTGAGCCCATGTTTGGACAGGAGGTTCGATGGACTAAGTATGATAGAAGCATGAGACTGTGGCAGGTAGAAGCCAAAGAATCCAAGTTTCTGTGCCGGTGGCTCATTGTGGCTACTGGTGAGAATGCGGAACCAGTGGTACCAGAGATTGCGGGCATCTCGAATTTTGGAGGAAGATTGCTGCACACTAGCATATACAAGAATGGAGCTGATTTCAAAGGAAGTAAGGTTTTGGTTGTGGGCTGTGGCAACTCTGGCATGGAAGTTAGTTTGGATCTATGTAATAGTGGTGCTCAAGTTTCTTTAGTAGTGAGAGATAAGTTGCATGTTTTGCCCAGAGAAATATTTGGAATCTCCACCTTTGCTCTGTCCATGTGGCTGCTAAAATGGTTTCCAGTAAGCTTAGTTGATGGGTTGATCCTCCTATGTTCACGGATGATCCTTGGAGACACAGGCCAAATTGGGATCAAAAGACCAGAATTCGGTCCCCTTCACCTGAAGAATGCTACAGGAAAGACCCCAGTATTGGATGTCGGTGCTGTAGCTAAAATCAGGTCTAGTGAGGTGAAGGTGGTTTGTGGCATTCGAAGATTCACAGCTAAAGGTGTAGAATTTGTGAATGGAGAAGTACAGGAGTTCGACTCAGTAATCCTAGCGACAGGTTATAGAAGCAACGTAGCCTCATGGCTCAAGGAGGGCAACTTCTTCAGTCAGAAAGACGGTTATCCCAAAAATCCATTCCCAAACAATTGGAAAGGCGAGGATGGCGCATATAGCGTTGGCTTCACCAGGCGAGGCTTGTATGGGGCTTCAATTGATGCTCAGAGAGTAGCAGAAGATATTGCAAGGCAATGGAAATCCCAAATGAAGCATTTGCATCTTGACTTATAG 1188 44.87 MMSKELKQVLIPGPLIIGAGPSGLAVAACLKKRGVPSLILEKENCMASLWNLKTYDRLRLHLPKKFCELPYMKFPSEFPAYPTKQQFISYLEDYAKSFSIEPMFGQEVRWTKYDRSMRLWQVEAKESKFLCRWLIVATGENAEPVVPEIAGISNFGGRLLHTSIYKNGADFKGSKVLVVGCGNSGMEVSLDLCNSGAQVSLVVRDKLHVLPREIFGISTFALSMWLLKWFPVSLVDGLILLCSRMILGDTGQIGIKRPEFGPLHLKNATGKTPVLDVGAVAKIRSSEVKVVCGIRRFTAKGVEFVNGEVQEFDSVILATGYRSNVASWLKEGNFFSQKDGYPKNPFPNNWKGEDGAYSVGFTRRGLYGASIDAQRVAEDIARQWKSQMKHLHLDL* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18026698 18028680 + Vvi4g944 Vvi4g944 785723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g944 395 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vvi4g944 395 Gene3D - 14 391 IPR036188 -
Vvi4g944 395 PANTHER EXPRESSED PROTEIN 6 392 - -
Vvi4g944 395 SUPERFAMILY FAD/NAD(P)-binding domain 174 384 IPR036188 -
Vvi4g944 395 PRINTS Pyridine nucleotide disulphide reductase class-II signature 13 35 - -
Vvi4g944 395 PRINTS Pyridine nucleotide disulphide reductase class-II signature 132 140 - -
Vvi4g944 395 PRINTS Pyridine nucleotide disulphide reductase class-II signature 171 195 - -
Vvi4g944 395 SUPERFAMILY FAD/NAD(P)-binding domain 15 206 IPR036188 -
Vvi4g944 395 Pfam Pyridine nucleotide-disulphide oxidoreductase 15 206 - -
Vvi4g944 395 PRINTS FAD-dependent pyridine nucleotide reductase signature 14 33 - -
Vvi4g944 395 PRINTS FAD-dependent pyridine nucleotide reductase signature 175 193 - -
Vvi4g944 395 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 6 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g944 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - vvi:100252977 804.283
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83