Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g949 ATGAGGTGCCCGTACTGCACGGCGGCGCAGGGGCGGTGCGGCACCACGGGGTCAGGGCGATTGGTGACGGAGTGCACCTCCTGTGGACGAGTCATGGAAGAGCGCCAATCCCAAATCCACCACTTATTCCACCTTCGAGCCCAAGATACCCCTCTCTGCCTCGTCACTTCCGACCTCCCACCACCTCCTCCTCAGCAAGCCCAGACCGCCCAGGAACAAGAAGATGATCCTTTCGAGTCCACCGGCTTCATCTCCGCCTTCTCCACCTGGTCCCTCGACCCATGCCCAATCTTCGCCCGCTCGTGCCTTTCCTTCTCAGGCCACCTTGCTGAACTCGAGCCGTCGTCTTCGTCTCTGGCCTCCTCTGGACCTGCGGTTGTGGTCGATAATCTTAGGGCTTATCTGCAGATCATAGACGTGGCCTCCATTTTGGGGTTGGACTATGATATAGCGGACCACGCATTTGAGCTATTCAGGGACTGTTCTTCGGCTACCTGTTTGAGGAATCGCAGTGTGGAGGCTCTTGCCACTGCTGCTCTTGTTCAGGCCATTAGGGAGGCCCAGGAGCCCAGAACTCTTCAGGAAATCTCAATTGCAGCCAATGTACCCCAGAAGGAGATAGGGAAGTACATCAAGATACTGGGAGAAGCTCTACAACTAAGCCAGCCCATTAATAGTAATTCCATATCAGTCCATATGCCAAGATTTTGTACGCTTCTACAGCTCAACAAATCTGCTCAGGAACTGGCGACACACATTGGAGAAGTTGTGATCAACAAATGCTTCTGTACTCGAAGGAACCCCATTAGCATTTCTGCAGCAGCTATATACTTGGCCTGCCAACTAGAAGACAAGCGCAAGACCCAGGCCGAGATTTGTAAGGTGACGGGTCTAACTGAGAGAAAGCATTTCCCACAACTGCAATTACCTCTGGCCGTTCTTCAGCACCTAGAGTTGATCTTATAG 966 53.11 MRCPYCTAAQGRCGTTGSGRLVTECTSCGRVMEERQSQIHHLFHLRAQDTPLCLVTSDLPPPPPQQAQTAQEQEDDPFESTGFISAFSTWSLDPCPIFARSCLSFSGHLAELEPSSSSLASSGPAVVVDNLRAYLQIIDVASILGLDYDIADHAFELFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTERKHFPQLQLPLAVLQHLELIL* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18064982 18073658 + Vvi4g949 Vvi4g949 785728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g949 321 Pfam Transcription factor TFIIB repeat 133 214 IPR013150 GO:0017025
Vvi4g949 321 Pfam Transcription factor TFIIB repeat 231 300 IPR013150 GO:0017025
Vvi4g949 321 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 300 - -
Vvi4g949 321 SMART cyclin_7 231 312 IPR013763 -
Vvi4g949 321 SMART cyclin_7 135 216 IPR013763 -
Vvi4g949 321 CDD CYCLIN 133 214 IPR013763 -
Vvi4g949 321 CDD CYCLIN 233 304 IPR013763 -
Vvi4g949 321 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 300 IPR000812 GO:0006352|GO:0070897
Vvi4g949 321 Gene3D - 131 222 - -
Vvi4g949 321 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Vvi4g949 321 PRINTS Transcription initiation factor IIB signature 177 196 IPR000812 GO:0006352|GO:0070897
Vvi4g949 321 PRINTS Transcription initiation factor IIB signature 203 218 IPR000812 GO:0006352|GO:0070897
Vvi4g949 321 PRINTS Transcription initiation factor IIB signature 232 250 IPR000812 GO:0006352|GO:0070897
Vvi4g949 321 PRINTS Transcription initiation factor IIB signature 266 282 IPR000812 GO:0006352|GO:0070897
Vvi4g949 321 SUPERFAMILY Cyclin-like 132 222 IPR036915 -
Vvi4g949 321 Gene3D - 231 307 - -
Vvi4g949 321 SUPERFAMILY Cyclin-like 229 300 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g949 K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB - vvi:100256546 560.066
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g949 Blo04g00921 . . . Bpe15g00434 . . . . . Cma03g00760 . Car03g00694 . Sed14g1109 . Cpe10g00603 Bhi03g01283 Tan03g1969 Cmetu08g1776 . Hepe04g1500 . . Cla01g01897 Cam01g1987 Cec04g1638 Cco04g1704 Clacu01g2006 Cmu01g1877 Cre04g1558 . . . . Lsi01g00685 . . Cme08g00838 . . . . . . . . . Cmo03g00787 . . . . . . . . . . . . . . . . . . . . . . Csa06g03230 Chy02g00658 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29