Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g950 ATGGACGAGATCTGGGAACGGGCCGTAGAAACTGCGCTGAACGGCCAAACAGATCACGCTTCGGTTCGAACCCTAACCCTAGACGGCGCAGTGAAGTGCGTCCACGGTCGACTTCCTCCTCCCAGTCTACTAGAGAAGTTCCAGAACCTCCAGCATCTATCGATCGCAAACATTGGTGTTTCGTCTCTCGAACAGTTTCCGCGTCTCAGAAGCCTTGAGAAACTCATCCTATCCGATAATCGAATAGCCGGAGGCCTTGAATTCCTGGTCGAAGCAGGTCTTGAATCGTTGCGAGACCTTGACCTTTCCAACAATAGAATTCAATTTATTGAAGATCTTGCGCCACTTGCACAGCTCAAGCTCGTTTCCCTTGATCTATATGAGTGTCCAGTTACGCGTGGTAAGGATTATCGATCTAGGGTTTTTGGATTAATAAAATCTCTGAAGTATTTAGATAAGATGGACGCAGAGGAGAATGAGCGGCCAGAGTCCGATGATGAGGAGGATGAGGAAGATGACGAGGAAGATGATCCTGGGAGTGGCGAAATTGACGGTGATGATAGGCCATATAGAATGAACAACGGGCATAGCGTGGAAGGGATAGTCGATGTTGATGAGGATGAAGAGAGTGATGCGGATGAGGAGGAGACAGAGACGGCGAGAGGGGTTAATGGATCAAAAGAGGAAGTGGATAACGAAGAGGGGGGTTTTACAGAGCCGAGGAGTACAGGGCGGGTGATGAGCGCGGAAGGGGAGATTGATGCCCATGAACAGGGGGAGGAGGACGCAGAGGAGGATGATAATGGAGAAACTGGGGAGGAAGAGCAGGGTGTTGAAGAAGTTGGAGAGTTTGAAGACGAAGAAGAGTGTGAGGAAGAGGAAGAAGATTATGCTTCAGGTTACTTGGTTCAACCTGTGGGCCAGGCTGAAGAGGATGCTGGAGGCAGTGAAATGGAGCCTGGAAACGAGGAAGATGATGCTGAAGAGGAGGAAGAAGTTGAAGATGACATTCAGCTGCTGCATCCCTCATCTCCGAGCCTCAAGAGGAAAAGAGATGAACAAGCCAACAATGATGATGGTGAAGGGGCTGATGAGGATGAGGATGACTTTTGCTTACTTAGTTCTCACTGGTTTTAG 1137 49.25 MDEIWERAVETALNGQTDHASVRTLTLDGAVKCVHGRLPPPSLLEKFQNLQHLSIANIGVSSLEQFPRLRSLEKLILSDNRIAGGLEFLVEAGLESLRDLDLSNNRIQFIEDLAPLAQLKLVSLDLYECPVTRGKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEDEEDDEEDDPGSGEIDGDDRPYRMNNGHSVEGIVDVDEDEESDADEEETETARGVNGSKEEVDNEEGGFTEPRSTGRVMSAEGEIDAHEQGEEDAEEDDNGETGEEEQGVEEVGEFEDEEECEEEEEDYASGYLVQPVGQAEEDAGGSEMEPGNEEDDAEEEEEVEDDIQLLHPSSPSLKRKRDEQANNDDGEGADEDEDDFCLLSSHWF* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18074948 18081203 + Vvi4g950 Vvi4g950 785729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g950 378 Coils Coil 246 266 - -
Vvi4g950 378 Pfam Leucine-rich repeat 57 164 - -
Vvi4g950 378 MobiDBLite consensus disorder prediction 316 336 - -
Vvi4g950 378 MobiDBLite consensus disorder prediction 217 238 - -
Vvi4g950 378 MobiDBLite consensus disorder prediction 202 216 - -
Vvi4g950 378 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Vvi4g950 378 MobiDBLite consensus disorder prediction 159 182 - -
Vvi4g950 378 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 2 355 IPR045081 -
Vvi4g950 378 MobiDBLite consensus disorder prediction 155 378 - -
Vvi4g950 378 Gene3D Ribonuclease Inhibitor 5 170 IPR032675 -
Vvi4g950 378 MobiDBLite consensus disorder prediction 255 298 - -
Vvi4g950 378 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32-RELATED PROTEIN 2 2 355 - -
Vvi4g950 378 SUPERFAMILY L domain-like 38 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g950 - - - mnt:21397740 388.267
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g570 Vvi4g950 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g950 . . Bda04g00056 Bda10g00127 . . Bma09g00073 Bma15g01001 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0802 Cone12ag0748 . . . . . . Blo05g00791 Blo06g00131 . . . Bpe06g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015391 2 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 12