Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g952 ATGTTGGTTTATGAATTTGTTCACAACAAAACATTGGAACACCACCTTCATGGTAATGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACTGCCATCCAAAGATTATCCATCGTGACATTAAAACTGCTAACATTCTCCTGGACTACAACTTTGAAGCCATGGTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGGGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGACCTGTTGATAACGCTATATTTGAAGAAAGCTTAGTAGACTGGGCTCGACCACTTCTATCGCGTGCATTGGCGGATGGCAACTATGACGAGCTGGTGGATCGATTCTTGGAGAACAATTACAACACTCAGGAGATGGCACGCATGGTGGCTTGTGCTGCTGCCAGCATCCGGCATTCTGCTAAAAGACGGCCAAAAATGAGCCAGATTGTACGGGCATTGGAGGGAGATGTATCACTGGAGGACCTAAACGATGTGACAAAGACCAACCAGAGCCCCGCGTATAGCACAAGTATGAGCTCAGAATACAACACAAGAATGTACAACGCTGATATGGAGAAGTTCAAAAAGATGGCATTGTCGAGCCAAGAGTTTGGAAGCAGCGAGGATGGAACTAGTGAGTATGGGCAGAACCCATCCTCTTCCGACAACTCCCAAGAGATGATCCATCGTTAA 840 46.43 MLVYEFVHNKTLEHHLHGNGRPIMDWASRMRIALGSAKGLAYLHEDCHPKIIHRDIKTANILLDYNFEAMVADFGLAKLSTDNCTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDNAIFEESLVDWARPLLSRALADGNYDELVDRFLENNYNTQEMARMVACAAASIRHSAKRRPKMSQIVRALEGDVSLEDLNDVTKTNQSPAYSTSMSSEYNTRMYNADMEKFKKMALSSQEFGSSEDGTSEYGQNPSSSDNSQEMIHR* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18102695 18105221 + Vvi4g952 Vvi4g952 785731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g952 279 SMART serkin_6 2 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g952 279 MobiDBLite consensus disorder prediction 249 279 - -
Vvi4g952 279 Pfam Protein kinase domain 2 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g952 279 MobiDBLite consensus disorder prediction 247 279 - -
Vvi4g952 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Vvi4g952 279 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 272 - -
Vvi4g952 279 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 272 - -
Vvi4g952 279 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g952 279 Gene3D Transferase(Phosphotransferase) domain 1 7 228 - -
Vvi4g952 279 SUPERFAMILY Protein kinase-like (PK-like) 1 202 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g581 Vvi4g952 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76640 PF00069 Pkinase 5.50E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g952 - - vvi:100265084 554.288