Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g955 ATGGTACCTGGTAACGAAGTAAAGGATGACGCCTCTGCGGATTCTCCGACTTCAGTCCTGGAGGATGAGGGTATTTGTGAGGAGAAAATTAAAGTTAAGATGGAGGATGACATACTTCATCCCCTCGATGCAAAAAATGGAGATTCTTCTCTTATATCCGGAACCATGGCAAAGGAAGAAGAGATGCTGATGAAAGAACGGGTGAAGGAAGAGGATGCAGAACAAGTAGTGACTCAGGAGGCCCCCCACTTGAATGACAGCCAGTTCACTAAATTGGATGAGCTTCTAACACAGACCCAGCTGTACTCAGAGTTTTTGCTGGAAAAAATGGATTCCATCACATTTAATCGTGTGGAGGAGAAAGAGAGTGAAATTGTTGAAGTAAAAAAGAGGGGTCGTGGTTCAAAAAGAAAAGCGGAATATAACAATAGGAAGGCCAAGAGAGCAGTTGCAGCCATGCTTACAAGATCTAAAGAAGGAGCTACTCCTGAAGATGTGAACCTCACCGAGGAGGAGAGAGCTGAGAAAGAGCAGGCTGGACTTGTACCCTTGTTGACAGGTGGAAAATTGAAGTCTTATCAGATCAAAGGTGTGAAGTGGCTGATCTCACTATGGCAAAATGGACTGAATGGGATCCTTGCAGATCAAATGGGGCTTGGAAAGACAATTCAAACTATTGGCTTCCTTGCACATTTAAAAGGAAAGGGGTTAGATGGCCCCTATTTGGTCATTGCTCCTCTTTCTACTCTCTCAAACTGGGCAAATGAAATAAAAAGGTTTGTGCCCTCAATAAATGCAATCATCTACCATGGCAATAGGAAAGAAAGAGATCAAATACGAATGAAGTATATGCCAAGAACAATTGGCCCCAAATTTCCTATAATTCTGACTTCTTATGAGGTTGCATTAAATGATGCTAGAAAGTATCTAAGGCATTACAATTGGAAATATCTTGTGGTTGATGAGGGGCACAGATTGAAGAACAGTAAATGCAAATTACTGAAGGAACTGAAGTTGTTACCCGTAGAAAATAAGCTTCTGCTCACTGGGACTCCTCTGCAGAACAACCTGGCAGAGCTTTGGTCTTTGTTAAACTTCATATTGCCTGATATTTTCTCATCCCATGAAGAATTTGAGTCCTGGGTTCTATGTAATCATCTACTGATTAAAAATTCAATTGAAGGCTTCCTATTAGACACAATGCACTTTACTACTATGATCAACAGATCTCTATCTATACTTTACAAGGTTCTGAAATTTAAAGTGTTTGATCTGTCAGGCAAGTGCAATAATGAAGCAGTGGTGGAAGAATTGGAAGAGAGGAAAAGGGCTCAAGTGGTGTCAAAACTTCATGCTATATTGCGTCCCTTTCTCCTTCGGAGAATGAAGTCAGATGTTGAGCAGATGCTTCCCAGAAAAAAAGAGATTATTTTGTATGCCACCATGACTGAGCATCAAAAGAATTTCAAGGATCATTTGGTTAATAAGACATTGGAGAATTATTTAAAAGAGAAAGCAAGCACTGGGCGTGGTGTGAAAGGAAAGCTTAACAATTTAATGGTCCAACTTCGGAAGAACTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATATCTCTATCCTCCTGTAGAACAGATAGTTGAACAGTGTGGCAAATTCCGCTTGCTGGACAGATTGTTGGCAAGGTTATTTGCCCGCAAGCATAAAGTTCTGATCTTCTCTCAGTGGACTAAGATTTTGGATATAATGGAATACTATTTTAGCGAGAAAGGACTTGAAGTTTGTAGAATTGATGGTAGTGTGAGGCTGGATGAAAGAAAAAGACAGATTGAGGAGTTCAATGATATGAACAGCAATTGTAGAGTATTTCTTCTCAGCACTCGAGCTGGTGGGCTAGGTATCAATCTCACTGCAGCTGATACTTGTATATTGTATGACAGTGACTGGAACCCTCAAATGGATCTGCAGGCCATGGATAGATGTCATAGGATAGGTCAAACCAAGCCTGTTCATGTTTACCGGCTTGCAACTGCCCAATCTATAGAGGGCCGCATGCTGAAAAGAGCTTTCAGTAAGTTGAAACTTGAACATGTTGTGATTGGGAAAGGCCAGTTCCAGCAAGAACGAATCAAACCTAATATGGATGTTTTGGAGGAAGAGGATCTGCTACAACTGCTTCAAGATCAAGAAGATTCTGAAGATAAGTTGATACAGACAGACATCAGTGAAGAAGATCTGGACCGGATCTTGGATCGCAGTGACTTGATTGGTGATACCTCCAATGATGATGGGAGGTCTAACTCTGCCGCGGATGCCTTTCCCCTGAAGGGCCCTGGTTGGGAAGTGATGACACCAACCGCAAGTGGAGGCATGCTCTCTACCCTTAATAGCTAA 2403 41.82 MVPGNEVKDDASADSPTSVLEDEGICEEKIKVKMEDDILHPLDAKNGDSSLISGTMAKEEEMLMKERVKEEDAEQVVTQEAPHLNDSQFTKLDELLTQTQLYSEFLLEKMDSITFNRVEEKESEIVEVKKRGRGSKRKAEYNNRKAKRAVAAMLTRSKEGATPEDVNLTEEERAEKEQAGLVPLLTGGKLKSYQIKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWANEIKRFVPSINAIIYHGNRKERDQIRMKYMPRTIGPKFPIILTSYEVALNDARKYLRHYNWKYLVVDEGHRLKNSKCKLLKELKLLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWVLCNHLLIKNSIEGFLLDTMHFTTMINRSLSILYKVLKFKVFDLSGKCNNEAVVEELEERKRAQVVSKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQKNFKDHLVNKTLENYLKEKASTGRGVKGKLNNLMVQLRKNCNHPDLLESAFDGSYLYPPVEQIVEQCGKFRLLDRLLARLFARKHKVLIFSQWTKILDIMEYYFSEKGLEVCRIDGSVRLDERKRQIEEFNDMNSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVIGKGQFQQERIKPNMDVLEEEDLLQLLQDQEDSEDKLIQTDISEEDLDRILDRSDLIGDTSNDDGRSNSAADAFPLKGPGWEVMTPTASGGMLSTLNS* 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18137892 18145402 + Vvi4g955 Vvi4g955 785734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g955 800 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 421 799 - -
Vvi4g955 800 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 5 382 - -
Vvi4g955 800 Gene3D - 467 766 IPR027417 -
Vvi4g955 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 759 IPR027417 -
Vvi4g955 800 Pfam SNF2-related domain 193 532 IPR000330 GO:0005524|GO:0140658
Vvi4g955 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 721 IPR001650 -
Vvi4g955 800 CDD SF2_C_SNF 544 678 - -
Vvi4g955 800 Pfam Helicase conserved C-terminal domain 557 668 IPR001650 -
Vvi4g955 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 387 IPR027417 -
Vvi4g955 800 PANTHER SNF2/RAD54 HELICASE FAMILY 421 799 - -
Vvi4g955 800 PANTHER SNF2/RAD54 HELICASE FAMILY 5 382 - -
Vvi4g955 800 SMART ultradead3 186 381 IPR014001 -
Vvi4g955 800 Gene3D - 158 395 IPR038718 -
Vvi4g955 800 MobiDBLite consensus disorder prediction 760 800 - -
Vvi4g955 800 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g955 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 370 IPR014001 -
Vvi4g955 800 SMART helicmild6 584 668 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g955 K19001 HELLS, DDM1; ATP-dependent DNA helicase - vvi:100263333 1419.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14804 PF00176 SNF2_N 1.10E-60 CL0023 Vvi TR