Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g958 ATGTGGCGGTGCGTTTCTCGTGGCCTTCGCTTCCGTTCTTCGGATTCGAAGCGATCCCTCACCAGCGAATATCTGAAACCTCACATTTCCAGATTCTTCTCTACTGAATCGACTGGGGGAGGATCCTCAGGCACTAGCGAGGCAGAGATTAAAGCTGCCATAGGAGAACTATCTAAACATGGGGTTGATACTGCTGGCATTACCGAGCTTTACCGATCCTCATACACCTCTTCATATACTATTGTCGATCATACATATGATGCAGTTGTTGTAGGAGCTGGTGGGGCAGGGCTTAGAGCTGCCATAGGACTATCTGAGCATGGGTTCAACACTGCTTGCATTACAAAGCTTTTCCCAACTCGGTCACACACAGTTGCAGCTCAGGGTGGTATAAATGCTGCATTAGGAAACATGACCGAAGATGACTGGAGATGGCACATGTATGACACTGTCAAGGGAAGTGACTGGTTAGGTGACCAGGATGCTATTCAGTACATGTGTAGGGAGGCACCAAAAGCAGTGATAGAGCTTGAGAACTATGGTTTACCCTTTTCTCGAACTGAAGATGGGAGAATATATCAACGTGCATTTGGTGGTCAAAGCCTGAACTTTGGAAAAGGTGGACAGGCATATCGTTGTGCATGTGCTGCCGATCGAACTGGGCATGCTTTGTTGCATACTCTATATGGCCAGGCTATGAAACATAATACACAATTTTTTGTAGAGTACTTTGCATTGGATCTTTTAATGGATAATGATGGTGCATGCCAAGGTGTAATTGCATTAAATATGGAGGATGGGACATTACATAGGTTCCAAGCTGCTTCAACAATTCTAGCCACAGGGGGCTATGGTAGAACATACTTCTCTGCAACCTCGGCCCATACATGCACTGGTGATGGTAATGCCATGGTTGCACGTGCCGGGCTCCCTCTTCAGGATCTCGAATTTGTGCAGTTTCACCCAACAGGTATATATGGTGCTGGGTGCCTTATTACTGAAGGATCCCGTGGTGAAGGTGGTATCCTGAGGAATAGTGAAGGTGAACGGTTTATGGAACGATATGCCCCTACAGCGAAGGATCTTGCATCAAGAGATGTTGTTTCAAGATCTATGACAATGGAAATCCGAGAAGGTCGTGGTGTAGGACCTCTGAAAGACCATATCTACCTCCACTTGAACCACTTACCTCCAGAAGTTCTGAAGGAACGGCTTCCTGGTATCTCTGAAACTGCTGCCATTTTTGCTGGAGTAGATGTTACAAAGGAGCCCATCCCTGTTTTACCCACTGTTCACTATAACATGGGAGGAATTCCCACAAATTACCATGGAGAGGTATTAACAATTAAAGGCAATGATCCCGATGCAGTAGTTCCTGGACTAATGGCTGCTGGTGAGGCTGCCTGTGCATCAGTCCATGGTGCCAATCGCCTTGGTGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGCTTGTGCAAATAGGGTTGCAGAGATCCATAAACCAGGGGAAAAACAAAAACCGTTGGAAAAGGATTCTGGGGAAAAGACAATTGCATGGCTGGACAAACTAAGGAATTCAAATGGCTCAATTCCGACCTCAAAAATCCGTTTAAATATGCAGCGAGTAATGCAAAATAATGCTGCTGTCTTCCGCACACAAGAAACATTAGAGGAAGGTTGTAAGTTGATTGACAAAGCATGGGAGAGCTTTCATGATGTACAGTTGAAGGATAGGAGTCTGATATGGAACTCTGACTTGTCAGAGACCATAGAGTTGGAAAATCTTTTGATAAACGCATGTATCACCATGCATTCTGCCGAGGCCAGGAAAGAGAGCAGAGGAGCGCATGCCCGTGAAGATTTTACGAAAAGAGATGATGAGAACTGGATAAGGCACACTTTGGGATATTGGGAAAATGAGAAGGTTCGGCTAGATTACAGGCCAGTTCACATGAACCCATTGGACGATGAGATTGAGTCGATCCCACCTAAAGCACGCGTATATTGA 2013 45.55 MWRCVSRGLRFRSSDSKRSLTSEYLKPHISRFFSTESTGGGSSGTSEAEIKAAIGELSKHGVDTAGITELYRSSYTSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMDNDGACQGVIALNMEDGTLHRFQAASTILATGGYGRTYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTIKGNDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGEKQKPLEKDSGEKTIAWLDKLRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDKAWESFHDVQLKDRSLIWNSDLSETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWIRHTLGYWENEKVRLDYRPVHMNPLDDEIESIPPKARVY* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18184768 18192254 + Vvi4g958 Vvi4g958 785737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g958 670 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 76 670 IPR030664 -
Vvi4g958 670 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 315 433 IPR027477 -
Vvi4g958 670 Pfam FAD binding domain 87 483 IPR003953 -
Vvi4g958 670 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 87 670 IPR014006 GO:0016627|GO:0022900|GO:0050660
Vvi4g958 670 PIRSF SDHA_APRA_LASPO 76 659 - -
Vvi4g958 670 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 84 670 IPR011281 GO:0006099|GO:0016627|GO:0050660
Vvi4g958 670 Gene3D succinate dehydrogenase protein domain 621 670 - -
Vvi4g958 670 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 121 130 IPR003952 GO:0016491
Vvi4g958 670 SUPERFAMILY FAD/NAD(P)-binding domain 76 506 IPR036188 -
Vvi4g958 670 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 529 670 IPR037099 GO:0016491
Vvi4g958 670 Pfam Fumarate reductase flavoprotein C-term 539 670 IPR015939 GO:0016491
Vvi4g958 670 Gene3D - 87 494 IPR036188 -
Vvi4g958 670 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 76 670 - -
Vvi4g958 670 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 325 428 IPR027477 -
Vvi4g958 670 Gene3D - 510 620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g958 K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] - vvi:100254718 1337.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41