Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g959 ATGGCATATATGTGTACAGACAGTGGAAATCTAATGGCAATTGCTCAGCAAGTGATAAAGCAGAAACAACAGCAGGAGCAACAGCAACAGCAGCAGCAGCAACAGCTTGGAGGTGTCAATTCCTTTTGCCTAAACCCTTGGACCACTACCCCTCACACTATGTCGACTGCTCCGGCTTTGGGATATGGGCTTGCCGGTGCGGGGTTTTCAGATCCTTTTCAGGTCGCCGGCACGGCGGATGCCGGTGAAGGTGGGTTTCAGTTTGCGCACTTGGAGCACCATTCCACTGGGTTTAGGTTTTCTGATTTCAGTGGAGGGGGTGGTGGCGAGTTCGACTCGGACGAGTGGATGGACAGCTTAATGGGTGGCGGTGATTCCACGGAGAGCTCAAATCTTCCTTCTGGTTGCGACGCGTGGCAAAATGATGCCGATCTCACCTTATATGGTGCCGATCCGTTCACCAGTTGTCCGAGTCGACTCAGCATAGCCTCTTCACCAACGTCAGATCTCAACCGAGTCATTTTCTCCGACGCCCAGAAGTGTACCAATCCCCCTCTTCAGCCACAGCCCGCCAATCCCCCACCGGCACACCTACAGAAGAACGACGTCGCCGGTGTCTCATCGGGTTCACCAGAAGCGGAGTCGGCCCCGCCAATATTGAAAGCCCTACTCGATTGTGCGCGGCTTGCAGACTCCGAACCCGATCGAGCGGTGAAATCACTGATTCGACTCAGAGAATCGGTATCAGAACATGGGGATCCGACTGAGAGAGTGGCGTTTTACTTCTCTGAAGCTCTCTACAGCAGAGTTTCTCATCAAGCAGAGAAGAGGCCCACTCTGTTCGAAACCTCTTCTGAGGAGTTTACGCTTTCGTACAAAGCTTTGAACGATGCATGCCCATATTCGAAGTTTGCGCATTTAACTGCGAACCAAGCAATCCTTGAAGCCACCGAAAGGGCGAGGAAGATTCACATAGTTGACTTTGGAATCGTTCAAGGGGTTCAGTGGGCCGCTCTTCTGCAAGCTTTGGCGACACGATCCGCCGGTAAACCCGCTAGGATTCGGATCTCCGGCATTCCTGCCCCGGCACTTGGAAAATCACCAGCGTCGTCTCTGTTCGCTACCGGAAACCGTCTTCGTGATTTCGCGAGGCTTCTTGATCTAAACTTTGAGTTTGAGCCTATTCTGACCCCGATTCAGGAGCTCAACGAATCAACCTTTCGGGTTGATCCGGATGAGGTTTTGGCTGTGAACTTCATGCTTCAGTTGTACAACCTCCTCGACGAAACCCCGGTGTCTGTCAATGCCGCTCTCCGCTTGGCCAAATCCCTCAATCCGAAAATCATGACTTTGGGCGAGTACGAAGCCTGCTTGAACGAGGTAGATTTTATCAACCGGTTCAAGAACGCATTGAGATACTACAGGGCCATATTTGATTCACTGGAGCCTAACTTGGCCAGAGACTCGTCGGACAGACTTCAAGTGGAGAGATTATTGCTCGGCCGGCGAATAGCAGGCGTTATCGGGCCGGAGGAACCAGGAACTAGACGAGAGCGAATGGAAGACAAGGAGAAATGGAAGTTTTTGGTGGAAAGTTGCGGTTTTGAGTCAGTACCCCTCAGCCATTACGCGAGCATAGATGAGGCATGGAAGGAGGTAACCAATCGCTTCCCTCCTCTCTCGAAAACCCAAGGGGCCAGTGCAGTCCATGACAAGGTGGCCAATGGGTTGATATTTTTGTTTCTTTTTTGTTGA 1755 51.85 MAYMCTDSGNLMAIAQQVIKQKQQQEQQQQQQQQQLGGVNSFCLNPWTTTPHTMSTAPALGYGLAGAGFSDPFQVAGTADAGEGGFQFAHLEHHSTGFRFSDFSGGGGGEFDSDEWMDSLMGGGDSTESSNLPSGCDAWQNDADLTLYGADPFTSCPSRLSIASSPTSDLNRVIFSDAQKCTNPPLQPQPANPPPAHLQKNDVAGVSSGSPEAESAPPILKALLDCARLADSEPDRAVKSLIRLRESVSEHGDPTERVAFYFSEALYSRVSHQAEKRPTLFETSSEEFTLSYKALNDACPYSKFAHLTANQAILEATERARKIHIVDFGIVQGVQWAALLQALATRSAGKPARIRISGIPAPALGKSPASSLFATGNRLRDFARLLDLNFEFEPILTPIQELNESTFRVDPDEVLAVNFMLQLYNLLDETPVSVNAALRLAKSLNPKIMTLGEYEACLNEVDFINRFKNALRYYRAIFDSLEPNLARDSSDRLQVERLLLGRRIAGVIGPEEPGTRRERMEDKEKWKFLVESCGFESVPLSHYASIDEAWKEVTNRFPPLSKTQGASAVHDKVANGLIFLFLFC* 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18196919 18200082 + Vvi4g959 Vvi4g959 785738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g959 584 Pfam GRAS domain family 221 545 IPR005202 -
Vvi4g959 584 ProSiteProfiles GRAS family profile. 210 584 IPR005202 -
Vvi4g959 584 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 220 547 - -
Vvi4g959 584 Coils Coil 12 35 - -
Vvi4g959 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 220 547 IPR005202 -
Vvi4g959 584 MobiDBLite consensus disorder prediction 180 214 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14805 PF03514 GRAS 1.50E-97 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g959 - - vvi:100246179 994.186