Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g96 ATGGCAGAAAAACCCCAACCGGTACGGGTTCTGTACTGCTCCGTTTGTAGTCTTCCAGCAGAGTATTGCGAATTCGGACCCGATTTTGAGAAATGCAAGCCATGGTTGATCAAGAACGCGCCCGAACTCTACCCAGATCTTCTTAAAGAGGCTAGTGAAAAGGAAGCTGACAAGGTTTCTGAACAGCTACAGTCAGTTGGGATCTCTTCCGGGGCTGGCAATGAGACTGCTCCTTCTGGGAAAACGTCAACATCTAAGCAAGAGGAAGTAAAACGTCTTCCTGGTGGAAAAATAAAGAAGAAAGAGAAACAAGAGGTCATTATTGAGAAGGTTGTGCGCAATAAGCGCAAGTGTATCACAATTGTGAAAGGACTGGACCTATTTGGTGTTAAACTTGGTGATGCTTCCAAAAAGCTTGGGAAGAAGTTTGCCACCGGAGCATCTGTTGTTAAGGGCCCAACTGATAAGGAGCAAATTGATGTTCAAGGGGACATATCCTACGACATTGTAGAATTTGTAACAGATACCTGGCCTGATGTGCCTGAAACTGCCATTTACTTCATTGAAGACGGGAGAAAGGTCTCGGCTGCTTGA 594 45.45 MAEKPQPVRVLYCSVCSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEASEKEADKVSEQLQSVGISSGAGNETAPSGKTSTSKQEEVKRLPGGKIKKKEKQEVIIEKVVRNKRKCITIVKGLDLFGVKLGDASKKLGKKFATGASVVKGPTDKEQIDVQGDISYDIVEFVTDTWPDVPETAIYFIEDGRKVSAA* 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 982055 986881 - Vvi4g96 Vvi4g96 784875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g96 197 MobiDBLite consensus disorder prediction 55 95 - -
Vvi4g96 197 TIGRFAM DRP1: density-regulated protein DRP1 7 187 IPR005873 GO:0003743
Vvi4g96 197 CDD DENR_C 104 189 IPR046447 -
Vvi4g96 197 Pfam Translation initiation factor SUI1 103 176 IPR001950 GO:0003743|GO:0006413
Vvi4g96 197 SUPERFAMILY eIF1-like 19 188 IPR036877 GO:0003743|GO:0006413
Vvi4g96 197 MobiDBLite consensus disorder prediction 62 84 - -
Vvi4g96 197 PANTHER TRANSLATION MACHINERY-ASSOCIATED PROTEIN 22 1 197 - -
Vvi4g96 197 ProSiteProfiles Translation initiation factor SUI1 family profile. 106 177 IPR001950 GO:0003743|GO:0006413
Vvi4g96 197 Gene3D - 46 183 - -
Vvi4g96 197 PANTHER DENSITY-REGULATED PROTEIN HOMOLOG 1 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g96 K24272 DENR, TMA22; density-regulated protein - vvi:100264692 380.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g96 Vvi11g175 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g96 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010206 1 1 2 1 1 0 2 1 0 1 0 0 2 1 1 2 0 0 2 0 1 2 1 1 1 1 1 2 2 2 32