Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g967 ATGTTTTTCCCTGAGGTGGACATTAGAGATCCGGAGCATCCGTATTCACTAGAACAGCTTAGTGTGCTGTCGGAGGAATCCATTACTGTTGATGAGAAGCTTGGGCGAATTTTGATAACATTCACTCCAACGATCCAGCATTGCAGCATGGCAACAGTAATTGGCTTATGTCTGCGAGTTAAACTAAAACACTATTTCCCTCCACATTTCAAGGTTGACATCAAAGTATCTCCTGGATCTCATGCAAATGAAGAATCAGTTAATAAGCAGTTGAATGATAAAGAAAGAGTTGCTGCTGCCTTGGAGAACCCCAATCTTCGCCAGCTTGTGGATGAGTGCCTCTACTCCAATGAACTCTAA 360 42.78 MFFPEVDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKHYFPPHFKVDIKVSPGSHANEESVNKQLNDKERVAAALENPNLRQLVDECLYSNEL* 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18301282 18304437 - Vvi4g967 Vvi4g967 785746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g967 119 Pfam Iron-sulfur cluster assembly protein 8 76 IPR002744 -
Vvi4g967 119 Gene3D - 83 114 - -
Vvi4g967 119 Gene3D - 5 82 IPR034904 -
Vvi4g967 119 PANTHER PROTEIN AE7-LIKE 1 5 118 - -
Vvi4g967 119 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 7 90 IPR034904 -
Vvi4g967 119 PANTHER UNCHARACTERIZED 5 118 IPR039796 GO:0106035
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g967 - - - vvi:100259830 223.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g967 . Blo16g00042 . . . Bpe13g00447 . . Cmo04g00842 Cmo16g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01297 . . . . . . . . . . . . Cma16g00661 . . . . Cpe14g00564 . . . . . . . Cla07g00875 Cam07g0947 Cec07g1014 Cco07g0992 Clacu07g0922 Cmu07g0922 Cre07g1291 Lsi07g00197 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002873 1 4 2 1 2 1 3 1 2 1 1 2 2 1 2 3 2 1 4 1 1 0 1 1 1 1 2 4 2 2 52