Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g968 ATGGAAGTCTCGGGTACGAGAGACCTTCTTTTGTCGCTCTCGGAATCGATCGCATTTCACCGGCTTCCCAATTTAGAGACAATTGCCGTGATCACCAAGGCAAAAGGCGCTAATGTGTATTCGTGGGACGATCGGAGAGGGTTCTTGTCCTTTGCCAGGCAAAAGAGAGTCTGTATTTTCAGGCACGATGGGGGCCGGGGATTTGTGGAGGTTAAAGAATTTGGTGTTCCAGATTTTGTGAAGTCAATGTCTTGGTGTGGTGAAAATATATGTTTGGGGATTAGAAGAGAATATATGATATTGAATGCCACAAACGGTGCATTGTCTGAGATATTTCCTTCTGGGAGGATTGCCCCACCTTTAGTGGTCTCCCTTCCTTCTGGAGAACTTCTTCTTGGGAAGGACAACATTGGGGTTTTTGTGGACCAAAATGGGAAGCTTCTTCAAGAGGGCAGGATTTGTTGGTCTGAGGCCCCTAAAGTTGTTGTCATTCAGAAGCCATATGCAATAGCTCTCTTACAGAGACATGTTGAGATACGGTCCCTCCGAGTTCCATATCCATTGATACAAACTGTGGTTCTCCGCAATATGTGTCATCTTCACCAGAGTAACAATGCCATACTTGTTGCAGTAGACAACTCTGTTTATGGGCTATTCCCTGTTCCTCTAGGAGCACAGATTGTACAACTAACAGCGTCTGGTGATTTTGAGGAAGCTTTGGCTTTGTGTAAAATGCTTCCACCAGAAGATGCAAGCCTCCGAGCTGCAAAGGAGGGGTCAATTCATATAAGGTATGCACACTATCTGTTTGAAAATGGGAGCTATGAAGAGGCCATGGATCAGTTTTTGGCATCTCAAGTAGATATCACCTATGTGCTTTCTTTGTATCCATCCATTGTTCTTCCCAAATCAGTTGTGCTTCCTGAGCCTGAGAAGCTGATGGAGAATGTTTGGGATGCTTCACATCTCTCAAGAGGTTCATCTGGTGTCTCAGATGATATGGAATCCTCACCTCCTCCACAGCTATTGGAATCTGAAGAAAATGCAGTACTTGAGTCAAAGAAAATGAGCCACAACACTCTCATGGCTCTTATCAAGTTCTTGCAAAAGAAGAGATACAATATAATTGAGAAAGCCACTGCTGAGAGAACGGAGGAGGTTGTTTTAGATGCTGTTGGAGATAATTTTGCATCTTATGATTCAACTAGGTCTAAAAAATCAAACAAGGGGCGTGTTAACATTGCCATCAGCTCAGGTGCTAGGGAGACAGCAGCAATACTAGATACAGCACTACTCCAAGCCCTGCTTCTTACTGGACAGTCTTCAGCTGCTTTGGAATTACTGAAAAGTCTTAACTATTGCGATATGAAAATATGTGAAGAGATTCTTCAGAAAAGAAATCATCACACTGCTCTGTTAGAACTTTACAAGTGCAATGGAATGCATCATGATGCTCTCAAACTTTTGCATCAATTGGTAGAAGATTCAAAGTCAGACCAACCACAAGCTGAACTAAGCCAAAAATTCAAGCCTGAAATGATAATTGAATATCTCAAGCCTCTGTGTGCAACCGAACCTATGCTTGTCTTGGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCACAAACTATTGATCTCTTTTTGTCTGGAAATATTCCGGCGGACTTGGTCAACTCTTACTTAAAACAGCATGCTCCAAACATGCAAGCCATGTACTTAGAGCTTATGCTTGCCATGAATGAACATGGGATCTCTGGAAATCTGCAGAATGAGATGGTGCAAATCTATCTATCGGAAGTACTTGAATGGCATGCAGATTTATCTGCTCAGGGGAAATGGGACGAGAAAGCTTATTCCCCTACAAGGAAGAAATTATTGTCTGCTTTGGAAAGTATCTCAGGTTATAACCCTGAGGGTTTGTTGAAGCGTCTTCCCCCAGATGCTTTATATGAAGAGCGTGCAATTTTGCTGGGCAAAATGAACCTGCATGAGTTTGCCTTATCTCTGTATGTCCATAAGCTTCATGTTCCTGAACTGGCACTGTCCTATTGTGATCGTGTATATGAGTCCGTACTTCATCAAACTTCAGGAAAAACTTCTGGCAATATATACCTCACTCTTTTGCAAATCTATTTGAACCCTCGAAGGACAACAAAGAACTTTGAAAAGAGAATTACTAGTCTAGTATCATCTCAGAATACAAGCATTCCGAAGGTCAGTTCAGGAACATCAGTTAAAGCTAAAGGAGGTCGCTTGGGTAAGAAAATTGCTGAGATTGAGGGTGCAGAAGACATGCGAGTTAGTCTCAGCAGCACTGATAGCGGGAGGAGTGATGGTGATGCAGATGAACCTAGTGAGGAAGGAGGTTCTAGCATCATGCTTGATGAGGTCCTTGATCTGTTGAGCCGAAGGTGGGATAGAATCCATGGAGCACAGGCCCTCAAACTCTTACCGAGGGAAACTAAATTGCAGAACTTGCTTCCATTTCTTGGGCCCCTCCTGAGGAAATCCAGTGAAGCATACAGGAATCTATCAGTGATCAAGAGTCTTAGACAGAGTGAGAATTTGCAGGTAAAGGATGAACTCCACAACCAGAGGAAAACGGTTGTGAGGATCAGCAGTGACAGTATGTGCTCTCTCTGCAACAAGAAGATAGGGACAAGTGTTTTCGCTGTCTACCCCAATGGGAAGACACTGGTGCATTTCGTTTGCTTTAGAGACTCACAGAGTATGAAGGCTGTGGTTAAAAGCTCTCCACTGAGAAAGCGTTAA 2775 43.24 MEVSGTRDLLLSLSESIAFHRLPNLETIAVITKAKGANVYSWDDRRGFLSFARQKRVCIFRHDGGRGFVEVKEFGVPDFVKSMSWCGENICLGIRREYMILNATNGALSEIFPSGRIAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRICWSEAPKVVVIQKPYAIALLQRHVEIRSLRVPYPLIQTVVLRNMCHLHQSNNAILVAVDNSVYGLFPVPLGAQIVQLTASGDFEEALALCKMLPPEDASLRAAKEGSIHIRYAHYLFENGSYEEAMDQFLASQVDITYVLSLYPSIVLPKSVVLPEPEKLMENVWDASHLSRGSSGVSDDMESSPPPQLLESEENAVLESKKMSHNTLMALIKFLQKKRYNIIEKATAERTEEVVLDAVGDNFASYDSTRSKKSNKGRVNIAISSGARETAAILDTALLQALLLTGQSSAALELLKSLNYCDMKICEEILQKRNHHTALLELYKCNGMHHDALKLLHQLVEDSKSDQPQAELSQKFKPEMIIEYLKPLCATEPMLVLEFSMLVLESCPSQTIDLFLSGNIPADLVNSYLKQHAPNMQAMYLELMLAMNEHGISGNLQNEMVQIYLSEVLEWHADLSAQGKWDEKAYSPTRKKLLSALESISGYNPEGLLKRLPPDALYEERAILLGKMNLHEFALSLYVHKLHVPELALSYCDRVYESVLHQTSGKTSGNIYLTLLQIYLNPRRTTKNFEKRITSLVSSQNTSIPKVSSGTSVKAKGGRLGKKIAEIEGAEDMRVSLSSTDSGRSDGDADEPSEEGGSSIMLDEVLDLLSRRWDRIHGAQALKLLPRETKLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELHNQRKTVVRISSDSMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVVKSSPLRKR* 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18329571 18348704 + Vvi4g968 Vvi4g968 785747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g968 924 Pfam CNH domain 7 198 IPR001180 -
Vvi4g968 924 MobiDBLite consensus disorder prediction 767 790 - -
Vvi4g968 924 Pfam Region in Clathrin and VPS 557 687 IPR000547 GO:0006886|GO:0016192
Vvi4g968 924 PANTHER VACUOLAR SORTING PROTEIN 39 1 924 - -
Vvi4g968 924 ProSiteProfiles Citron homology (CNH) domain profile. 1 207 IPR001180 -
Vvi4g968 924 MobiDBLite consensus disorder prediction 323 343 - -
Vvi4g968 924 PANTHER CNH DOMAIN CONTAINING 1 924 IPR032914 GO:0016192
Vvi4g968 924 Pfam Vacuolar sorting protein 39 domain 1 427 537 IPR019452 -
Vvi4g968 924 Pfam Vacuolar sorting protein 39 domain 2 799 907 IPR019453 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g968 K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 - vvi:100265014 1783.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g968 . Blo16g00043 . . . Bpe13g00446 . . Cmo04g00844 Cmo16g00721 . . . . . . . . . . . . . . . . . . . . . Cone8ag0808 . . . . . Chy07g01300 . . . Bda11g01869 . . . . Bma06g00123 . . . Cma16g00663 . . . . Cpe14g00567 . . . . . . . Cla07g00878 Cam07g0950 Cec07g1016 Cco07g0995 Clacu07g0925 Cmu07g0924 Cre07g1293 Lsi07g00195 Csa04g00500 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008233 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 0 1 1 1 1 1 1 2 1 35