Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g970 ATGTGGCGAAGGGGTTTTAGCAGCAGCGCCGGCTGCAGTAACGCATTGAAGGAGAAGAAATGGGACGCGCTGGTAATCGGTGCCGGCCACAACGGCCTAACCGCCGGCGCATACCTGGCTCGCGCTGGTCTCTCTGTTGCTGTTCTCGAACGTCGCCACATCATAGGCGGCGCGGCCGTCACAGAAGAAATTATCCCTGGCTTTAAGTTCTCCCGATGCAGCTACCTCCAGAGCCTCCTCCGCCCCTCCGTCATCAAGGAATTAGAGTTAGCAAGACATGGATTAAAGTTGTTGAAGAGGAATCCTTCATCCTTCACGCCTTGTGTTGATGGGCGGTATCTTCTCTTAGGCCCTGATAAGGACCTTAATTATTCTGAGATTTCAAAGTTCTCCAAACGAGATGCTGATGCCTATTTAAGATATGAGAATCAGCTAGAGAACTTCTGTAAACTCATGGATCCGCTTTTGGATTCACCTCCTCCTGAAACCATGCAAGGGCTTTCATCATTTAATGACCGCATCAAGAATAATGTACGCAAATCAGTTTTTTGGGCTCATTGTCTGCGTTCGGCACTCTCATTGGGACAAAAAGATTTGGTGGACTTCATGGACCTTTTATTGGCCCCTGCATCAAAAGTTTTGAATAACTGGTTTGAGACTGATGTCCTGAAGGCAACACTTGCAACAGATGCTGTGATTGGAAGTACAGGAAGTGTCCACACACCTGGGAGTGGATATGTTCTGCTACATCATGTGATGGGAGAAACCGATGGTGATCGTGGTATTTGGTCGTATGTTGAAGGTGGTATGGGCTCAGTATCCTTGGCTATTAGCAAGGCTGCTAAGGAAGCTGGGGCTCATGTTGTAACAAGTGCAGAGGTTTCACAGTTGATGATTGAGGACTCGGGCAGAGTAAATGGGGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGGAATTTGTACCTGAAAATGTCCTTCCTGATGATTTTCTCCGTGCTATTAAGTACTCTGACTACAGCTCTGGAACTACCAAAATGAACTTAGCTGTTGATACATTGCCTCAATTTCAGTGTTGCAAATTGAGCCACCCTGATGCAGGTCCTCAACATGTGGGTACCATTCACATTGGTTCTGAGAGTATGGAGGAGATTGACTCAGCTAGTCAAGATGCTACGAATGGCATACCATCACAGAGACCAATTATCGAGATGACAATTCCTTCTGTATTGGACAAGACTATTTCTCCACCTGGTCAGCATGTGATCAACTTATTTATTCAATACACACCCTATAAACCTTTGGATGGCAGCTGGGAAGATCCTGCATATAGAGAATTATTTGCACAAAGATGTTTCAACTTGATCGATGAATATGCCCCTGGTTTCAGCTCAACAATACTTGGCTATGACATGCTGACTCCACCAGACCTTGAAAGGGAAATTGGTCTCACAGGAGGGAATATCTTTCATGGTGCCATGGGGTTGGATTCTCTCTTCCTCATGCGACCTGTAAAAGGATGGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCTGTGGTACTTGAAGATGTTAAGAAATCATTCAACTGA 1698 46.53 MWRRGFSSSAGCSNALKEKKWDALVIGAGHNGLTAGAYLARAGLSVAVLERRHIIGGAAVTEEIIPGFKFSRCSYLQSLLRPSVIKELELARHGLKLLKRNPSSFTPCVDGRYLLLGPDKDLNYSEISKFSKRDADAYLRYENQLENFCKLMDPLLDSPPPETMQGLSSFNDRIKNNVRKSVFWAHCLRSALSLGQKDLVDFMDLLLAPASKVLNNWFETDVLKATLATDAVIGSTGSVHTPGSGYVLLHHVMGETDGDRGIWSYVEGGMGSVSLAISKAAKEAGAHVVTSAEVSQLMIEDSGRVNGVLLADGTRVHSSVVLSNATPYKTFMEFVPENVLPDDFLRAIKYSDYSSGTTKMNLAVDTLPQFQCCKLSHPDAGPQHVGTIHIGSESMEEIDSASQDATNGIPSQRPIIEMTIPSVLDKTISPPGQHVINLFIQYTPYKPLDGSWEDPAYRELFAQRCFNLIDEYAPGFSSTILGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYLCGSGAHPGGGVMGAPGRNAASVVLEDVKKSFN* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18354304 18370077 - Vvi4g970 Vvi4g970 785749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g970 565 Gene3D - 222 370 IPR036188 -
Vvi4g970 565 PANTHER FAD/NAD(P)-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 563 - -
Vvi4g970 565 SUPERFAMILY FAD/NAD(P)-binding domain 19 438 IPR036188 -
Vvi4g970 565 Pfam NAD(P)-binding Rossmann-like domain 25 70 - -
Vvi4g970 565 Pfam Flavin containing amine oxidoreductase 238 366 IPR002937 GO:0016491
Vvi4g970 565 PANTHER PHYTOENE DEHYDROGENASE 1 563 - -
Vvi4g970 565 Gene3D - 20 113 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g970 - - - vvi:100259816 1143.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g970 . . . . . . Bma09g00076 . . Cmo16g00663 Cma03g00750 . Car03g00685 . Sed14g1114 . . Bhi03g01291 Tan03g1978 Cmetu07g0294 . Hepe04g1510 . . . . . . . . . . . . . Lsi01g00676 . . . . . Bda11g01868 . . . . . . Cmo03g00779 . Cma16g00608 . . . . . . . . . . . . Cla07g00795 Cam07g0860 Cec07g0911 Cco07g0893 Clacu07g0834 Cmu07g0838 Cre07g1195 Lsi07g00266 . Chy02g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001846 2 2 2 3 2 3 2 4 3 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 1 2 4 2 68