Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g975 ATGGATTCTGATACGATTATGGAACCGATGGATTTGAAGGTGCGAGAGCTGTTGAAGGAGGTACAGCTCGACTACTCTTCTGCAACAACAAAGCTCGTCGACGACACCGTTTCAGCCATTAAACAAGCCATCGATACAATCCCTGAAGACTTGAAGGTTACAGCAGATTTTGCTCCACAATTTGTCAGAGACATTGGCGCTGATAAAGTTGAATTCAACTTCAAGAAGCCAAAATTATTCGAAATTGGTGGTAGTTATTCAATACGCTGTGTGGCAAAGCCTGATGTAGATATTGATCTTTTTGTTAGGTTGCCAAAGGAGTGTTTCCATGAGAAGGACTATTTGAATCACCGTTACCATGCAAAAAGGTTCCTCTATCTCTGCATAATCAAGAAGTATTTGAACTCTTCTTCCTTCATTCGAAAGGTTGAATGGTCCACCCTACAAAATGAGGCTCGAAAACCAGTATTGGTTGTCTATCCAGCTATGGAGCTTGCTGAAGTTCCTGGGCTTTCTGTGAGAATAATACCTACGGCAACATCCCTGTTTAGTATTTTGAAGTTAAACTTGAAGCGGAACAATGTTTGTTCTTTGAAGCAAGATGAGAGTACTCCTCAGGCTACACCAAAATACAATAGTAGTATTTTGGAAGACATGTTTCTAGAGGACAATGCGGAATTTGTGAAGCGAACTTTTCTTGGTTGGAAGGAGTTGGGGGAGGCTTTAATTTTGCTTAAGGTATGGGCTCGGCAGAGAAGTTCGATATATGCTTATGATTGCTTAAATGGATTTCTGATCTCTGTCATAATGTCATACCTTGCAACGGATTCTGGAAGGAATCTCATTAACAATTCAATGAAGCCAATGCAGATATTTCGTGTGACCTTGGATTTCATTGCCACATCTAAGCTATGGAATACTGGTCTTTATTTCAAGTCTCAAAGCCTACTGAATATTTCAAAGGAGGAGTTGCTGGAAAGGAAGCAATATTTAAGATTATTTCCTGTAGTTATATCTGAGTCACTTGCTCATTTTAATTTGGCGTTCCGGATTACAGGAGGTGGCTTTTTGGAGCTCCAAGATGAGGCTGTTTTGACCCTTAGTTGCATAGGCAAATGTAAAGATGGTGGGTTTGAGGAGCTTTTTATGACTAAGATTGACTATCCAGCTAAATATGACTACTGCATGAGATTGAATTTGAAAGGAAATAGTGATGTTTATGCATTGGGGTTTTGCTTGGATGAGGAATGTTGGAGATCCTTTGAGCAGAAAGTTCATTTTCTTCTGTGTCAAGGATTGAGTGATAGAGCAAAGTTCATCCGTGTTAGCTGGAAAAATGCCACTTCAGAATGCAATGTGGAAAATGGTTTATCAATCTTTGATCGAGAGCCATTGCTCATTGGGATTTCAGTCAGCTCTTTAGAGAAAGCTTTTAGAGTGGTCGATGTTGGTCCAAATGCTGAGCATAAAGATGAGGCTCTTAAATTCCGGAAGTTTTGGGGAGAGAAAGCAGAGCTTCGAAGATTTAAAGATGGGATGATTGCAGAAAGCACAGTATGGGAAAGCAAGCAATGGGAAAGGCATACCATCATAAAAAGGATTACCGAATATCTCCTTTTGCGGCACCTTTCCTTGTCAGAAAGAAATATCGTGCATATTGTAGATCAACTTGATTTCTCTCTGGTTAATGGTGTTGGAGATTCTATCTCATTTTCTGGAAGTTTGCTTGAGGCATTTGAAGTGTTGTCAAAGCGATTACATCTTCTCAAAGACATTCCTTTGAAGGTGTCTAGTGTGCAGCCTTTAGATTCAGCTTTCAGGTTTACATCTGTCTTCCCTCCTGAACCTCATCCCCTAGCCAACGAAAAGAGTGCTGTTCCTAGATTAAATAAGCTCACTTCAACCTGTATTCAACCATTGGAAGTTATGATTCAGGCAAGATTCATGCGACTATTGGAAGGTTCAGGCAACTGGCCAATGGATGATGTAGCTATTGAGAAGACTAAATCTGCTTTCCTTCTAAGAATTGGAGAAAGTCTCCAGAACAATTGGGGTATGATCTGCACTGCTACTGAGGAAAATGTGGATGTTTTTATGTCTGGATATGCATTTCGTCTTAGAATTTTGCATGAAAGAGGCCTGAGTTTGTTGAATAGGCAAAATGGGAGTAATCAACTGAAGCATATTTCTTCTGTTGACAAGGAACTTTTTACCCGTGGCCAGCATTCTAGCATGATTAATGGTCTACAGGGTTGTTACCCAATATATGGGCCAGTTGTTCGGCTAGCGAAGCGATGGGTTGCTTCGCATCTCTTTTCAGCTTGCTTGGTCGAGGAGGCAGTTGAGCTATTGGTTGCATATCTCTTTTTGAAGCCTTTACCATTTTATGTGCCTTGCTCTCGGATATCAGGATTTCTAAGGTTCTTACGGTTATTATCAGAGTATGACTGGAATTTCTCTGCTTTGGTGGTTGACATAAATAGTGATTTGAGCCCAAGTGATGAAAAAGAGATTAATGAGAATTTTACTTCAAGTAGAAAAGGTTATGAAGAAAATGCCCAAAATGTAAACCCGGCAATGTTCTTAGCAACAGCTTATGATAAGGCATCTGAAGCTTGGACCAGATTCTCACCAAACTCATCAGAGCTTAGAAGGTTGGTGGCCTATGCCCGAAGCAGTGCAAACCTATTGACTAAACTTATTTTGGGGGGTCAAATTGATTCTTACAAATGGGAGTGTCTTTTCCGTACTCCCTTGAACAACTATGATGCTGTAATTCTTCTCCACAGGGAGAAAATGCCTTATCCCCAACGTCTTCTCTTCCCATCTGAGATGAACCAAGGGAAGCATGTTGCTCAGGGCAATGCTAGCAAGGCTTTTCATCCATTTTTGTTGCCTGAACACATGAAAGGAAACTCCCCAGATTTGAAAGATACGCTACTGGTAGACTTTGATCCACTGAGGTGCTTCATTGGGGATTTAGAGGAAGAGTTTCCAAACGCTTTCAAGTTGTGGTACGATTCTCTAGGAGGTGATGCCATTGGCATGATGTGGGAGAGATCATCTTCAAAGAAACGGGGACGAAGTGAAGAGAATGAGGAGGAAAAAGATCCAGTCAATGTGCTAAAAGCTGTCGGTGAGGTCGGGAAAGGGTTTGTGAGGAGTATTTATCTACTCAAGTCCCCAAGGCTCAGGAACTGA 3201 41.08 MDSDTIMEPMDLKVRELLKEVQLDYSSATTKLVDDTVSAIKQAIDTIPEDLKVTADFAPQFVRDIGADKVEFNFKKPKLFEIGGSYSIRCVAKPDVDIDLFVRLPKECFHEKDYLNHRYHAKRFLYLCIIKKYLNSSSFIRKVEWSTLQNEARKPVLVVYPAMELAEVPGLSVRIIPTATSLFSILKLNLKRNNVCSLKQDESTPQATPKYNSSILEDMFLEDNAEFVKRTFLGWKELGEALILLKVWARQRSSIYAYDCLNGFLISVIMSYLATDSGRNLINNSMKPMQIFRVTLDFIATSKLWNTGLYFKSQSLLNISKEELLERKQYLRLFPVVISESLAHFNLAFRITGGGFLELQDEAVLTLSCIGKCKDGGFEELFMTKIDYPAKYDYCMRLNLKGNSDVYALGFCLDEECWRSFEQKVHFLLCQGLSDRAKFIRVSWKNATSECNVENGLSIFDREPLLIGISVSSLEKAFRVVDVGPNAEHKDEALKFRKFWGEKAELRRFKDGMIAESTVWESKQWERHTIIKRITEYLLLRHLSLSERNIVHIVDQLDFSLVNGVGDSISFSGSLLEAFEVLSKRLHLLKDIPLKVSSVQPLDSAFRFTSVFPPEPHPLANEKSAVPRLNKLTSTCIQPLEVMIQARFMRLLEGSGNWPMDDVAIEKTKSAFLLRIGESLQNNWGMICTATEENVDVFMSGYAFRLRILHERGLSLLNRQNGSNQLKHISSVDKELFTRGQHSSMINGLQGCYPIYGPVVRLAKRWVASHLFSACLVEEAVELLVAYLFLKPLPFYVPCSRISGFLRFLRLLSEYDWNFSALVVDINSDLSPSDEKEINENFTSSRKGYEENAQNVNPAMFLATAYDKASEAWTRFSPNSSELRRLVAYARSSANLLTKLILGGQIDSYKWECLFRTPLNNYDAVILLHREKMPYPQRLLFPSEMNQGKHVAQGNASKAFHPFLLPEHMKGNSPDLKDTLLVDFDPLRCFIGDLEEEFPNAFKLWYDSLGGDAIGMMWERSSSKKRGRSEENEEEKDPVNVLKAVGEVGKGFVRSIYLLKSPRLRN* 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18401346 18413421 - Vvi4g975 Vvi4g975 785754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g975 1066 Pfam Nrap protein PAP/OAS-like domain 239 385 IPR035367 -
Vvi4g975 1066 Gene3D - 198 388 - -
Vvi4g975 1066 Pfam Nrap protein domain 6 919 1056 IPR035371 -
Vvi4g975 1066 Pfam Nrap protein domain 3 390 543 IPR035368 -
Vvi4g975 1066 Pfam Nrap protein nucleotidyltransferase domain 4 572 750 IPR035369 -
Vvi4g975 1066 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 8 1058 IPR005554 -
Vvi4g975 1066 Pfam Nrap protein domain 1 98 231 IPR035082 -
Vvi4g975 1066 Pfam Nrap protein PAP/OAS1-like domain 5 753 906 IPR035370 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g975 K14544 UTP22, NOL6; U3 small nucleolar RNA-associated protein 22 - vvi:100242719 2097.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g975 . . . . . . . . . . Cma03g00748 . Car03g00683 . . . Cpe10g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00776 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009270 1 3 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 34