Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g977 ATGAAGATGGCGGGGGTGAGGCCCCACATGGTGGAGATCGAGCCAGGCACGGTCATGAACTTCTGGGTTCCCTTGAGAAAACCAACCAAACCCGTTGTGGTCCTGGTGCACGGCTTCGCTGCTGAGGGTATTGTCACATGGCAATTCCAGGTGGGTGCTTTAACTAAAAAGTACTCGGTCTACGTCCCGGATCTTCTATTCTTCGGTGATTCTACCACGGACAAGTCCGACCGGTCGCCGACTTTTCAGGCGGAATGTTTGGAGAAGGGGCTGAGAAAGCTTGGAGTGGAGAAGTGTACAATCGTGGGGTTCAGCTATGGTGGGATGGTGGCGTTCAAGATGGCGGAGTTGCACCAGGACTTGGTTCAGGCGGTGGTGGTGTCGGGTTCCATCTTGGCCATGACTGACTCGATCAGTGAAGCCACTCTTCAGAGGCTTGGGTTCGCTTCTTCTTCGGAGCTGTTGCTGCCCACCTCCGTCAAGGGCCTTAAAGCCCTTCTCTCTGTTGCAGCTCACAAGAAGCTTTGGTTCCCGGATCGCCTTCACAAGGACTACCTTGAGGTGATGTTCACAAACAGGCAGGAAAGGGGTGATCTCCTAGAGGCTTTGGTGGTCAGCACCAAGGATACCAACGTACCCAATTTCCCACAGAAAATACATCTCTTATGGGGGGAGAACGATCAGATTTTCAAGCAGGAGCTTGCCCATAACATGAAAGAGCAGCTAGGAGACAAGGCCACATTTCAAGGTATAAAGAAAGCCGGTCACCTGGTTCACCTGGAGAGACCCTGTGTCTATAATAGGCATCTCAAGCTGTTCCTTGCTTCCCTGAACACAGATGGAGCCCCAAAATGA 855 52.4 MKMAGVRPHMVEIEPGTVMNFWVPLRKPTKPVVVLVHGFAAEGIVTWQFQVGALTKKYSVYVPDLLFFGDSTTDKSDRSPTFQAECLEKGLRKLGVEKCTIVGFSYGGMVAFKMAELHQDLVQAVVVSGSILAMTDSISEATLQRLGFASSSELLLPTSVKGLKALLSVAAHKKLWFPDRLHKDYLEVMFTNRQERGDLLEALVVSTKDTNVPNFPQKIHLLWGENDQIFKQELAHNMKEQLGDKATFQGIKKAGHLVHLERPCVYNRHLKLFLASLNTDGAPK* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18428527 18430772 + Vvi4g977 Vvi4g977 785756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g977 284 SUPERFAMILY alpha/beta-Hydrolases 3 274 IPR029058 -
Vvi4g977 284 Pfam alpha/beta hydrolase fold 31 263 IPR000073 -
Vvi4g977 284 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 276 - -
Vvi4g977 284 PANTHER SI:DKEY-122A22.2 1 276 - -
Vvi4g977 284 Gene3D alpha/beta hydrolase 4 279 IPR029058 -
Vvi4g977 284 PRINTS Alpha/beta hydrolase fold signature 57 72 IPR000073 -
Vvi4g977 284 PRINTS Alpha/beta hydrolase fold signature 101 114 IPR000073 -
Vvi4g977 284 PRINTS Alpha/beta hydrolase fold signature 219 233 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g977 - - - vvi:100258123 561.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g601 Vvi4g977 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63