Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g979 ATGGGTGAGCAATTCCACTCAGAGTCCCATGAACCCTTCACTACTCTATTACAACCCACCTCTACTACGGAAGCCGAATCCACCATCACCACCGTCACCGCCGATGATATTTCCCTACAAGCCTCATCTTCTTCCAAACTTCCGTTCCGATCCCGGAAGATCAGAAAGATTTCTTCCGCCGCCACGCCCAGCGGCTCTGACGGAAAATCTGAGCCACCATTGTCGTGTGAAGGCGAACTCGATGTGGCGCTTCGGCATCTGACCAAGTCCGATCCACTTCTCGCTGCCTTGATCAACACTCACCAGCCGCCGACTTTCGATTCTTGTCACCCTCCATTTCTTGCCCTGGCCAAAAGCATTTTATACCAACAACTGGCCTACAAGGCCGCGACCTCAATCTACACTCGCTTCGTCGCGCTTTGTGGTGGCGAGGCCGGTGTTGTTCCCGACGCCGTGCTAGCCCTCTCGCCGTCGCAGCTCCGGCAAATTGGAGTCTCTGGTCGAAAAGCTGGTTATCTTCACGACCTCGCTAGCAAGTACAAGACTGGAATTCTGTCTGACTCATCAATTATGGGAATGGATGATAAGTCACTCTTCACAATGCTCACCATGGTTAAGGGAATTGGATCTTGGTCCGTACACATGTTCATGATTTTCTCGCTCCATAGACCAGACGTTCTTCCAGTAGGAGATGTTGGTGTACGTAAGGGCGTGCAATTTTTATATGGATTGGAAGAATTGCCACGGCCATCGCAGATGGAGCAGCTATGTGAGAAGTGGAAACCTTATCGGTCTGTTGGGTCATGGTACATGTGGAGGTTTGTTGAGGCAAAAGGTGCCCCACCGGCCAGGGCGGCTGTCGCATTGGTCGATGGTGCTACCTCGGAGCAGCAACAGCAACAGGAGCAACAACAGCAGCCACAACAGCTTCAGCTTGTGGATCCCATCAACGGCATTGTGAACCTCGGGGCCTGCATTTGGGGACAATGA 990 52.42 MGEQFHSESHEPFTTLLQPTSTTEAESTITTVTADDISLQASSSSKLPFRSRKIRKISSAATPSGSDGKSEPPLSCEGELDVALRHLTKSDPLLAALINTHQPPTFDSCHPPFLALAKSILYQQLAYKAATSIYTRFVALCGGEAGVVPDAVLALSPSQLRQIGVSGRKAGYLHDLASKYKTGILSDSSIMGMDDKSLFTMLTMVKGIGSWSVHMFMIFSLHRPDVLPVGDVGVRKGVQFLYGLEELPRPSQMEQLCEKWKPYRSVGSWYMWRFVEAKGAPPARAAVALVDGATSEQQQQQEQQQQPQQLQLVDPINGIVNLGACIWGQ* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18439820 18444620 + Vvi4g979 Vvi4g979 785758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g979 329 PANTHER DNA GLYCOSYLASE SUPERFAMILY PROTEIN-RELATED 73 323 - -
Vvi4g979 329 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 73 323 - -
Vvi4g979 329 CDD ENDO3c 113 274 IPR003265 GO:0006284
Vvi4g979 329 Pfam HhH-GPD superfamily base excision DNA repair protein 118 261 IPR003265 GO:0006284
Vvi4g979 329 SMART endo3end 121 276 IPR003265 GO:0006284
Vvi4g979 329 MobiDBLite consensus disorder prediction 7 27 - -
Vvi4g979 329 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g979 329 SUPERFAMILY DNA-glycosylase 103 274 IPR011257 GO:0003824|GO:0006281
Vvi4g979 329 Gene3D Hypothetical protein; domain 2 110 223 - -
Vvi4g979 329 Gene3D - 85 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g979 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - vvi:100252980 605.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g602 Vvi4g979 ECH
Vvi4g979 Vvi18g952 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31