Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g98 ATGGCGATGAGGCGACTGTGTGTGACAATTCTCATTTTCTCTCTCCTCCAACTTTCTCTCTGTAACCCTGACTTCACTGCCTTGCTGGCTTTCAAATCGTCTTCAGACCACTTCAATTCGCTCTCCTCCTGGTCCAATTCAACTCACCCCTGTTCCGGGTCGTGGCTCGGCGTCACCTGCAACAATGGCCAAGTCACCCACCTCGTTCTCGACCGCCTCAACCTCACCGGGTCCACTCGGGCCCTCTCTCGCCTCCCTCAGCTCCGGCTTCTTAGCCTCAACCACAACCGCCTCTCCTCTGTTGTCAACCTCTCTTCCTGGCCCAACCTCAAGCACCTCTACCTCTCTGACAACCGCTTCTCCGGAGAATTCCCCGCTGGCTTGCGTCACTTGCTAACCCTAAGACTCGAAGAGAATTCATTCACTGGCACGCTCTCGTCAAATTCTTCTTCTTCTTCAATTTACGATTTCAACGTCTCCGGCAACAATCTCGCCGGCGAAATCCCGGCATGGCTGTCGCAGTTCCCTTTGTCGTCGTTCGCCAGAAACGCGAAGCTATGCGGGAAGCCGTTGGGGTACAGTTGTTCGAATGGTCCCACAAAAACGAGTAAGAGAAAAAGGAGAGTGAGTGATGCACTGATCCTCGTGATCATCATCTTCGATGCGGTGGCGGGCGTGGGGATAATCATGACCGTTGGATGGTGCTGTTACAGGAGCATGAGCAGGAGGAGAACTGGGGTCCATAGAGAAATGGGGGGCTCTGATGGGGCACCCAGAGAAAGAAACGAGATGGTGATGTTTGAAGGGTGTAAGGGTTTCTCTAAGGTGGATGATCTGCTGAAGGCCTCTGCAGAGCTGCTGGGGAAGGGAAGCGTGGGGAGCACGTACAAGGTAGTGATGGAGGGCGGCGGTGTGGTGGCGGTGAAGAGAGTCAGAGAAGGGTTGAAAAGGAGGGAGATTGATGGATTGATGAAAGAAATTGGTGGGTTGAGGCATCGTAATATTGTGAGCCTCAGAGCATACTACTTTTCCAGAGATGAGTTGCTTTTGGTCTATGATTTTCTACCCAATGGAAGCTTGCATTCTCTCTTGCACGGGAATCGAGGACCAGGAAGGACCCCATTAGATTGGACCACAAGGTTGAAGCTGGCCTCAGGTGCTGCCAGAGGGCTAGCTTTCCTCCATGGCTGCAACAAATCCAAGCTCACCCATGGACACCTCACATCATCCAATATCATAGTTGACACCTCCGGCAATGCCTGCATTGCAGACATTGGTCTCCACCACTTCCTGCCTGCTCAGTCTTCATCATCAGACAACGCCTACACGCCACCAGAATTGGCGGTCAACCACCACCATGCCAAACTATCACAGAAAGCCGACGTCTACAGCTTTGGGGTTGTGCTGTTGGAGATTCTGACAGGGAAGATGGTGGTGGGGGAAGGGGAAACGAGCTTGGCGAAGTGGGTTGAGATGAGGCAGGAGGAGGAGTGGACATGGGAGGTGTTTGATTTTGAGCTGTGGAGGTATAAAGAGATGGAGCAGGAGATGAAGGCGCTTCTGCAGATTGCATTGCTGTGCTTGGCCCCTCTGCCTAGAGACCGCCCAAAGATGAGTATGATGCATAAGATGATAGAAGATATTAGAATGAAGGGTGGGCAGAAAGATGGGGTGGTTCATTCTCCTTTGTCTTCTGGGTATTCTTCTCAATCAGAAAGCACCCCCAACTTCACTAGCAGCTGA 1743 52.27 MAMRRLCVTILIFSLLQLSLCNPDFTALLAFKSSSDHFNSLSSWSNSTHPCSGSWLGVTCNNGQVTHLVLDRLNLTGSTRALSRLPQLRLLSLNHNRLSSVVNLSSWPNLKHLYLSDNRFSGEFPAGLRHLLTLRLEENSFTGTLSSNSSSSSIYDFNVSGNNLAGEIPAWLSQFPLSSFARNAKLCGKPLGYSCSNGPTKTSKRKRRVSDALILVIIIFDAVAGVGIIMTVGWCCYRSMSRRRTGVHREMGGSDGAPRERNEMVMFEGCKGFSKVDDLLKASAELLGKGSVGSTYKVVMEGGGVVAVKRVREGLKRREIDGLMKEIGGLRHRNIVSLRAYYFSRDELLLVYDFLPNGSLHSLLHGNRGPGRTPLDWTTRLKLASGAARGLAFLHGCNKSKLTHGHLTSSNIIVDTSGNACIADIGLHHFLPAQSSSSDNAYTPPELAVNHHHAKLSQKADVYSFGVVLLEILTGKMVVGEGETSLAKWVEMRQEEEWTWEVFDFELWRYKEMEQEMKALLQIALLCLAPLPRDRPKMSMMHKMIEDIRMKGGQKDGVVHSPLSSGYSSQSESTPNFTSS* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 998107 1000178 - Vvi4g98 Vvi4g98 784877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g98 580 ProSiteProfiles Leucine-rich repeat profile. 87 108 IPR001611 GO:0005515
Vvi4g98 580 Gene3D Transferase(Phosphotransferase) domain 1 355 561 - -
Vvi4g98 580 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vvi4g98 580 MobiDBLite consensus disorder prediction 561 580 - -
Vvi4g98 580 Gene3D Ribonuclease Inhibitor 22 197 IPR032675 -
Vvi4g98 580 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 128 564 - -
Vvi4g98 580 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 128 - -
Vvi4g98 580 Gene3D Phosphorylase Kinase; domain 1 260 354 - -
Vvi4g98 580 ProSiteProfiles Protein kinase domain profile. 281 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g98 580 MobiDBLite consensus disorder prediction 558 580 - -
Vvi4g98 580 SUPERFAMILY L domain-like 23 177 - -
Vvi4g98 580 Pfam Leucine Rich repeats (2 copies) 86 120 IPR025875 -
Vvi4g98 580 Pfam Protein kinase domain 285 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g98 580 SUPERFAMILY Protein kinase-like (PK-like) 285 545 IPR011009 -
Vvi4g98 580 PANTHER OS02G0267766 PROTEIN 4 128 - -
Vvi4g98 580 PANTHER OS02G0267766 PROTEIN 128 564 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g98 - - - vvi:100250812 1092.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g98 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00519 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005612 0 2 1 2 1 0 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 2 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76641 PF00069 Pkinase 1.10E-28 CL0016 Vvi PK