Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g980 | ATGGCTGAGCAGCAAGCAGCAGAGATCAGAGGGCGTAAAATAATGAGGGATATCCAAGGAGTCTATCACCGTCACCTTCATCATCACCAATTCAATCTACAACAACAAACACAACACGGGGAAGTAGGGGATCCAGACCCAGATCCAGATCCTGTTTCAGCTACAATTGCAGTCTCCGGTGCAACCGCCACACCGATTACCGGTGGATCAAATCCAAAAGTAGCAGCAGCGCCGCCACATCCACCTCCTCAATCAGCAGCCTCAATTCGATATAGAGAATGCCTCAAGAATCATGCGGCGAGCATGGGCGGGCACGTCTTCGATGGATGCGGAGAATTCATGCCAAGCGGAGAGGAAGGGACTCTAGAAGCCTTGAAATGTGCAGCTTGCGATTGCCACCGCAATTTTCATCGCAAAGAGATCGATGGAGAGTCGCAGCCCACCGCCAATTGTTACTATACTTGTAACCCCAACACTAACAGTAGCAGAAGAAATACAATAGCTCCTCAGCTCCCTCCATCGCATGCTCCACTGCCCCATCTTCATCAGCACCATAAATACTCCCATGCTCCCGCAGAGTCATCCAGCGAAGATCTAAACATGTTTCAGTCCAATGTTGGAATGCACCTGCAGCCGCAGCCAGCGTTTGCGCTCTCAAAGAAGAGGTTTCGAACAAAATTCTCACAAGAACAAAAAGATAAGATGCAGGAGTTTGCGGAGAAGTTGGGATGGAAGATTCAGAAGCAAGAAGAACAGGAAGTCCAGCAGTTTTGTTCAGATGTGGGTGTAAAGAGACAGGTTTTCAAGGTCTGGATGCACAACAACAAACAAGCCATGAAGAAGAAGCAACTAAAAACATTGGCAACATCAACCTGTATTATTTTTCTACTCGAAACATATTGGGATCTTACCCTTTCTTCCTTCCATATTACTAGCTCAAAAAGCTCCTCCCCAGAAAGAGAAAGGGAAAGAAAAGAAGAAACTAACGACAAAAATTGCACGTATTTTCCTCTTTGCTTGGTGGTCATGGACTCATGGGAGGTAAGTCTCACGTACGAGTCTCTTTTTACTAATCTACTTTACTACTACTGTACTATCATCTCTTGCATTAATCCCATCTGTCCATTTAATCGCCAATTCTTTGGTTCCTTAAAACCCTACCACATTCTTCTATCTTTCTCCACAGTCGAAGTGAAACAACTGGACTGCTCCTGTCAGCACACTGGCATATGA | 1233 | 45.74 | MAEQQAAEIRGRKIMRDIQGVYHRHLHHHQFNLQQQTQHGEVGDPDPDPDPVSATIAVSGATATPITGGSNPKVAAAPPHPPPQSAASIRYRECLKNHAASMGGHVFDGCGEFMPSGEEGTLEALKCAACDCHRNFHRKEIDGESQPTANCYYTCNPNTNSSRRNTIAPQLPPSHAPLPHLHQHHKYSHAPAESSSEDLNMFQSNVGMHLQPQPAFALSKKRFRTKFSQEQKDKMQEFAEKLGWKIQKQEEQEVQQFCSDVGVKRQVFKVWMHNNKQAMKKKQLKTLATSTCIIFLLETYWDLTLSSFHITSSKSSSPERERERKEETNDKNCTYFPLCLVVMDSWEVSLTYESLFTNLLYYYCTIISCINPICPFNRQFFGSLKPYHILLSFSTVEVKQLDCSCQHTGI* | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18450984 | 18454288 | + | Vvi4g980 | Vvi4g980 | 785759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g980 | 410 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 91 | 140 | IPR006456 | - | |
Vvi4g980 | 410 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 220 | 277 | IPR006455 | - | |
Vvi4g980 | 410 | SUPERFAMILY | Homeodomain-like | 215 | 281 | IPR009057 | - | |
Vvi4g980 | 410 | Gene3D | - | 210 | 281 | - | - | |
Vvi4g980 | 410 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 7 | 20 | 282 | - | - | |
Vvi4g980 | 410 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 20 | 282 | - | - | |
Vvi4g980 | 410 | Pfam | ZF-HD protein dimerisation region | 89 | 141 | IPR006456 | - | |
Vvi4g980 | 410 | MobiDBLite | consensus disorder prediction | 172 | 196 | - | - | |
Vvi4g980 | 410 | ProSiteProfiles | 'Homeobox' domain profile. | 218 | 282 | IPR001356 | GO:0003677 | |
Vvi4g980 | 410 | MobiDBLite | consensus disorder prediction | 34 | 86 | - | - | |
Vvi4g980 | 410 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 90 | 141 | IPR006456 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14807 | PF04770 | ZF-HD_dimer | 7.70E-31 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g980 | - | - | vvi:100258112 | 735.717 |