Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g980 ATGGCTGAGCAGCAAGCAGCAGAGATCAGAGGGCGTAAAATAATGAGGGATATCCAAGGAGTCTATCACCGTCACCTTCATCATCACCAATTCAATCTACAACAACAAACACAACACGGGGAAGTAGGGGATCCAGACCCAGATCCAGATCCTGTTTCAGCTACAATTGCAGTCTCCGGTGCAACCGCCACACCGATTACCGGTGGATCAAATCCAAAAGTAGCAGCAGCGCCGCCACATCCACCTCCTCAATCAGCAGCCTCAATTCGATATAGAGAATGCCTCAAGAATCATGCGGCGAGCATGGGCGGGCACGTCTTCGATGGATGCGGAGAATTCATGCCAAGCGGAGAGGAAGGGACTCTAGAAGCCTTGAAATGTGCAGCTTGCGATTGCCACCGCAATTTTCATCGCAAAGAGATCGATGGAGAGTCGCAGCCCACCGCCAATTGTTACTATACTTGTAACCCCAACACTAACAGTAGCAGAAGAAATACAATAGCTCCTCAGCTCCCTCCATCGCATGCTCCACTGCCCCATCTTCATCAGCACCATAAATACTCCCATGCTCCCGCAGAGTCATCCAGCGAAGATCTAAACATGTTTCAGTCCAATGTTGGAATGCACCTGCAGCCGCAGCCAGCGTTTGCGCTCTCAAAGAAGAGGTTTCGAACAAAATTCTCACAAGAACAAAAAGATAAGATGCAGGAGTTTGCGGAGAAGTTGGGATGGAAGATTCAGAAGCAAGAAGAACAGGAAGTCCAGCAGTTTTGTTCAGATGTGGGTGTAAAGAGACAGGTTTTCAAGGTCTGGATGCACAACAACAAACAAGCCATGAAGAAGAAGCAACTAAAAACATTGGCAACATCAACCTGTATTATTTTTCTACTCGAAACATATTGGGATCTTACCCTTTCTTCCTTCCATATTACTAGCTCAAAAAGCTCCTCCCCAGAAAGAGAAAGGGAAAGAAAAGAAGAAACTAACGACAAAAATTGCACGTATTTTCCTCTTTGCTTGGTGGTCATGGACTCATGGGAGGTAAGTCTCACGTACGAGTCTCTTTTTACTAATCTACTTTACTACTACTGTACTATCATCTCTTGCATTAATCCCATCTGTCCATTTAATCGCCAATTCTTTGGTTCCTTAAAACCCTACCACATTCTTCTATCTTTCTCCACAGTCGAAGTGAAACAACTGGACTGCTCCTGTCAGCACACTGGCATATGA 1233 45.74 MAEQQAAEIRGRKIMRDIQGVYHRHLHHHQFNLQQQTQHGEVGDPDPDPDPVSATIAVSGATATPITGGSNPKVAAAPPHPPPQSAASIRYRECLKNHAASMGGHVFDGCGEFMPSGEEGTLEALKCAACDCHRNFHRKEIDGESQPTANCYYTCNPNTNSSRRNTIAPQLPPSHAPLPHLHQHHKYSHAPAESSSEDLNMFQSNVGMHLQPQPAFALSKKRFRTKFSQEQKDKMQEFAEKLGWKIQKQEEQEVQQFCSDVGVKRQVFKVWMHNNKQAMKKKQLKTLATSTCIIFLLETYWDLTLSSFHITSSKSSSPERERERKEETNDKNCTYFPLCLVVMDSWEVSLTYESLFTNLLYYYCTIISCINPICPFNRQFFGSLKPYHILLSFSTVEVKQLDCSCQHTGI* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18450984 18454288 + Vvi4g980 Vvi4g980 785759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g980 410 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 140 IPR006456 -
Vvi4g980 410 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 220 277 IPR006455 -
Vvi4g980 410 SUPERFAMILY Homeodomain-like 215 281 IPR009057 -
Vvi4g980 410 Gene3D - 210 281 - -
Vvi4g980 410 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 20 282 - -
Vvi4g980 410 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 282 - -
Vvi4g980 410 Pfam ZF-HD protein dimerisation region 89 141 IPR006456 -
Vvi4g980 410 MobiDBLite consensus disorder prediction 172 196 - -
Vvi4g980 410 ProSiteProfiles 'Homeobox' domain profile. 218 282 IPR001356 GO:0003677
Vvi4g980 410 MobiDBLite consensus disorder prediction 34 86 - -
Vvi4g980 410 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 90 141 IPR006456 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g980 Vvi18g953 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14807 PF04770 ZF-HD_dimer 7.70E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g980 - - vvi:100258112 735.717