Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g980 ATGGCTGAGCAGCAAGCAGCAGAGATCAGAGGGCGTAAAATAATGAGGGATATCCAAGGAGTCTATCACCGTCACCTTCATCATCACCAATTCAATCTACAACAACAAACACAACACGGGGAAGTAGGGGATCCAGACCCAGATCCAGATCCTGTTTCAGCTACAATTGCAGTCTCCGGTGCAACCGCCACACCGATTACCGGTGGATCAAATCCAAAAGTAGCAGCAGCGCCGCCACATCCACCTCCTCAATCAGCAGCCTCAATTCGATATAGAGAATGCCTCAAGAATCATGCGGCGAGCATGGGCGGGCACGTCTTCGATGGATGCGGAGAATTCATGCCAAGCGGAGAGGAAGGGACTCTAGAAGCCTTGAAATGTGCAGCTTGCGATTGCCACCGCAATTTTCATCGCAAAGAGATCGATGGAGAGTCGCAGCCCACCGCCAATTGTTACTATACTTGTAACCCCAACACTAACAGTAGCAGAAGAAATACAATAGCTCCTCAGCTCCCTCCATCGCATGCTCCACTGCCCCATCTTCATCAGCACCATAAATACTCCCATGCTCCCGCAGAGTCATCCAGCGAAGATCTAAACATGTTTCAGTCCAATGTTGGAATGCACCTGCAGCCGCAGCCAGCGTTTGCGCTCTCAAAGAAGAGGTTTCGAACAAAATTCTCACAAGAACAAAAAGATAAGATGCAGGAGTTTGCGGAGAAGTTGGGATGGAAGATTCAGAAGCAAGAAGAACAGGAAGTCCAGCAGTTTTGTTCAGATGTGGGTGTAAAGAGACAGGTTTTCAAGGTCTGGATGCACAACAACAAACAAGCCATGAAGAAGAAGCAACTAAAAACATTGGCAACATCAACCTGTATTATTTTTCTACTCGAAACATATTGGGATCTTACCCTTTCTTCCTTCCATATTACTAGCTCAAAAAGCTCCTCCCCAGAAAGAGAAAGGGAAAGAAAAGAAGAAACTAACGACAAAAATTGCACGTATTTTCCTCTTTGCTTGGTGGTCATGGACTCATGGGAGGTAAGTCTCACGTACGAGTCTCTTTTTACTAATCTACTTTACTACTACTGTACTATCATCTCTTGCATTAATCCCATCTGTCCATTTAATCGCCAATTCTTTGGTTCCTTAAAACCCTACCACATTCTTCTATCTTTCTCCACAGTCGAAGTGAAACAACTGGACTGCTCCTGTCAGCACACTGGCATATGA 1233 45.74 MAEQQAAEIRGRKIMRDIQGVYHRHLHHHQFNLQQQTQHGEVGDPDPDPDPVSATIAVSGATATPITGGSNPKVAAAPPHPPPQSAASIRYRECLKNHAASMGGHVFDGCGEFMPSGEEGTLEALKCAACDCHRNFHRKEIDGESQPTANCYYTCNPNTNSSRRNTIAPQLPPSHAPLPHLHQHHKYSHAPAESSSEDLNMFQSNVGMHLQPQPAFALSKKRFRTKFSQEQKDKMQEFAEKLGWKIQKQEEQEVQQFCSDVGVKRQVFKVWMHNNKQAMKKKQLKTLATSTCIIFLLETYWDLTLSSFHITSSKSSSPERERERKEETNDKNCTYFPLCLVVMDSWEVSLTYESLFTNLLYYYCTIISCINPICPFNRQFFGSLKPYHILLSFSTVEVKQLDCSCQHTGI* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18450984 18454288 + Vvi4g980 Vvi4g980 785759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g980 410 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 140 IPR006456 -
Vvi4g980 410 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 220 277 IPR006455 -
Vvi4g980 410 SUPERFAMILY Homeodomain-like 215 281 IPR009057 -
Vvi4g980 410 Gene3D - 210 281 - -
Vvi4g980 410 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 20 282 - -
Vvi4g980 410 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 282 - -
Vvi4g980 410 Pfam ZF-HD protein dimerisation region 89 141 IPR006456 -
Vvi4g980 410 MobiDBLite consensus disorder prediction 172 196 - -
Vvi4g980 410 ProSiteProfiles 'Homeobox' domain profile. 218 282 IPR001356 GO:0003677
Vvi4g980 410 MobiDBLite consensus disorder prediction 34 86 - -
Vvi4g980 410 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 90 141 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g980 - - - vvi:100258112 735.717
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g980 Vvi18g953 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi18g479 . 55 242 ZF-HD Transcription Factor Family AT4G24660 53.0 1.6e-53 206.5
Vvi18g953 ECH 131 277 ZF-HD Transcription Factor Family AT4G24660 54.0 2.2e-45 179.5
Vvi18g1498 . 59 236 ZF-HD Transcription Factor Family AT4G24660 52.4 5.3e-44 174.9
Vvi4g980 ECH 65 284 ZF-HD Transcription Factor Family AT2G18350 51.4 1.1e-50 197.2
Vvi18g479 . 104 246 ZF-HD Transcription Factor Family AT5G65410 50.8 2.9e-44 176.0
Vvi14g1541 . 54 188 ZF-HD Transcription Factor Family AT1G69600 52.4 4.3e-44 175.3
Vvi4g980 ECH 89 282 ZF-HD Transcription Factor Family AT1G14440 51.0 1.1e-47 187.6
Vvi14g1541 . 10 191 ZF-HD Transcription Factor Family AT3G28920 50.4 2.4e-55 213.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14807 PF04770 ZF-HD_dimer 7.70E-31 No_clan Vvi TF