Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g984 ATGGGGACTGATGCTACAGAAGTAGTGCCAACACTGCCTCGTCCTAATGCTGTAAAGGTGCATCAGTTAATGTGCACAGACCTAATGAATTTGGTTGATCGAGTCTTAAAGATATTACCAGAGATAGAAGCAGCTCGACCATGCAAAGCAGGAAGGGATGCATTGTGCTCAATAAACCTAGCAATTGAGAAAGCCAAGTCAGTCCTGCTGGACTGCAGCGAGTCTAGTAAGCTCTATTTGGCAATATCAGGCACTGTAATAGTGTTGAAATGTGAAAGAATAAGGAGCTTACTGGAGAAAAATTTAAGCCAAATTCAGACTATGGTTCCGTGTATGTTGAATGCACAGATTTCTCGAATAGTAGAGGATCTTAGGGCAGTAACGTTTTCCTTGGATTCATCTGAAGAAGAGGCTGGGAAGGTCATGCAAACATTGATGCGCCAGGAATCAGCTCAATCTGATTTGATAGAGAATTCAAAGATTGAGGCTCTTCAAATTGCAGCTTCAAGGCTTCATATTACATCTCAAAGAGATCAATTGATCGAGAAAAGATCCATTAGAAAGCAGCTTGAGAAAAGCAGCAATAATGAAAGAAAGAATCAAATGTTAATATACCTTTTGAATCTGCTGAAGAAGTATGGAAACATTATTGTGGAAGTGCAAATGGAGAATGCTGATGATCATCATGAAAGACCTTTTCCATTTCCAAACTCTTGTGGAGCTTCTTTATGTGGTCAATCTGTTGAAGTAGGATCTTGCTTAGGATATGGGCAACATGAGGCTCAAACTGACGTGTTTAGGAGGCCAATACCACCTGAGGAATTCATGTGCCCCATATCTTCAAGATTGATGTATGATCCGGTGATCATTGATTCGGGAGTAACATTTGAAAGGATGTGGATCCAGAAGTGGTTTGATGAGGGTCATGATACATGTCCACAAAGTAAAAAGAAGCTGGCCAAAATGTTGTTGACTCCGAATACTGCCATGAAAGAACTAATCTTAAAGTGGTGCATGAAGCATGGAATCCCTGAACCTGGCCCATGTTTAGAACCACCAGCATTTAACACATGGGAATATTCTTCTACTTCCATCACAAGCCTCAGTAATTCTATGAATGATCTAAACCTGCCAATAGATATCAGCGGAGTATCACTTGGATCTTTAGATAACAGTTACAGTTCAGACTCCTCACATATTAATATCAGAGATGGGTTAAATTTGATTACAGTGAAGACTAGTGATGAATCTCACAGATGTCATGGTCATGCAGATAAACCTGAGACAGATCTGAAGTTTTTATCTGAACTTGCTACACATCCATGGGAGTCCCAATACCAGGTGGTTGAAGATGTAGAAAAAGACTTGAAAGGCGATGATCAAGCTTGGCATTCACTATCATCTAAGAATTTTGTTGAACCACTGATTAGGTTTCTAAAGGATGCTTGTGAGCAGCATGATGTAAAAGCTCAGAGAGTTGGATCTCAGTTGTTATTGGCATTTGTCAGCAAAAGCAGAAGTGGTGTATCATACTTAGGAGAAGATGCATTTAATCTGATGACATCTCTTCTAGATTCAGAAGTAACTGAAGAAGCTCTTGCCATACTGGAAGTGTTGTCTAGCAACTTGAATTGTGGATCTAAAATTGCTGCAGCTGGCACTCTCACTTCTGTCCTAAAGATCCTGGACACCCAAAGAGAATTTCAGGAACCAGCCATTAAAATACTATATAATATGTCCTCAAAAAGTGATGTTCGTTCCTTCATTGTGTCTTTGGACTGCATCCCTAAGTTGGTCCCATTCTTGAAGGATACTCGTCTTGCAAAATATTGTATAGTTATTTTGAAAAATTTGTGTTATACCGAAGAGGGCAGGGTTTCTGTTGCTGGAACTGATGGATGCATAGCTTCCATTGTTGAATTACTTGAAAATGGAAGCTGTGAGGACCAAGAGCATGCAATGGCTATTCTCCTTTTTTTGTGCGCTCAACGTGTTCAATATTGCCAGTTGGTTATGGAAGAGGGTGCTGATGTCTTTACTTCGCTTGCCAGTATATCTCTCAATGGGAATGACAATGGAAAGGTGAAGGCAAATGAATTGCTTCGACTCTTAAGAGATATTGATCATAGTGATGTAAAAGAAAGTCCTGGATCCAATCTTGTTGTCCCTGTAGACTCCAGCAACTACCTTAAAGAGAAGAAATCATCTTCCAAGTCATCAGGAATTTTTGGAAGGATACCAATATTCTCAAAGCGCAGGTCTGGTTCACCAAAAAGAAAGAAATGA 2286 39.94 MGTDATEVVPTLPRPNAVKVHQLMCTDLMNLVDRVLKILPEIEAARPCKAGRDALCSINLAIEKAKSVLLDCSESSKLYLAISGTVIVLKCERIRSLLEKNLSQIQTMVPCMLNAQISRIVEDLRAVTFSLDSSEEEAGKVMQTLMRQESAQSDLIENSKIEALQIAASRLHITSQRDQLIEKRSIRKQLEKSSNNERKNQMLIYLLNLLKKYGNIIVEVQMENADDHHERPFPFPNSCGASLCGQSVEVGSCLGYGQHEAQTDVFRRPIPPEEFMCPISSRLMYDPVIIDSGVTFERMWIQKWFDEGHDTCPQSKKKLAKMLLTPNTAMKELILKWCMKHGIPEPGPCLEPPAFNTWEYSSTSITSLSNSMNDLNLPIDISGVSLGSLDNSYSSDSSHINIRDGLNLITVKTSDESHRCHGHADKPETDLKFLSELATHPWESQYQVVEDVEKDLKGDDQAWHSLSSKNFVEPLIRFLKDACEQHDVKAQRVGSQLLLAFVSKSRSGVSYLGEDAFNLMTSLLDSEVTEEALAILEVLSSNLNCGSKIAAAGTLTSVLKILDTQREFQEPAIKILYNMSSKSDVRSFIVSLDCIPKLVPFLKDTRLAKYCIVILKNLCYTEEGRVSVAGTDGCIASIVELLENGSCEDQEHAMAILLFLCAQRVQYCQLVMEEGADVFTSLASISLNGNDNGKVKANELLRLLRDIDHSDVKESPGSNLVVPVDSSNYLKEKKSSSKSSGIFGRIPIFSKRRSGSPKRKK* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18499215 18507148 + Vvi4g984 Vvi4g984 785763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g984 761 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Vvi4g984 761 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 24 727 - -
Vvi4g984 761 PANTHER U BOX DOMAIN-CONTAINING 24 727 - -
Vvi4g984 761 SUPERFAMILY ARM repeat 434 702 IPR016024 -
Vvi4g984 761 Gene3D - 431 719 IPR011989 -
Vvi4g984 761 CDD RING-Ubox_PUB 275 317 IPR045210 -
Vvi4g984 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Vvi4g984 761 SUPERFAMILY RING/U-box 271 346 - -
Vvi4g984 761 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Vvi4g984 761 MobiDBLite consensus disorder prediction 730 761 - -
Vvi4g984 761 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g984 - - - vvi:100251240 1446.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g984 Vvi18g956 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50