Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g985 ATGTTACACTGTCTACGCTCGCCGGAGGATTTTGCTGCCATAGGTAGGCCCGAAACTATGAAGTGGCTACATCAGCCACAGAAGTTTCAGCAACCTTCATTCCACAGCAAATCTTTTGGATTTTCTCAATCTTCCCAGATTGATGACTTGAATTCCGTACTTAGAGAGATACCTAATAGGAGTATGAAGGCGGAGAATAGTTGGGACAATGGTTTGCCGGGTTTGGGCGATTTTCCCACTGCCGGAACCGATTTTCGGGGACATGGTATGGGTTTTGAGTTGCCGGAAATTGCAGGTAGCTCTCTTGAGATGGATCATTCGATTTCGAGGACTTCTAGTTGCCCGCTACCGGATCTGGGGGCAGCAACATCCGTGGATGGTAGAGAGTTGGCTGGAAGAAACAGTGTGAAGAAGAGAAAAGCAGAGGTTGCTTTAACAGAGGAGTGCAAAGACCAGAAGATTAAAAGGGATGAGGAAGAGGAGGAATCTAAGATCGAAGAGAAACACAGTGAGATTTCCCCAAATGCTTCAAAGGTTTCTGGGTCTCCTAAGCCTGATTACATTCATGTGCGGGCGCGTCGTGGGCAGGCCACTGATAGCCATAGCTTAGCAGAAAGAGCAAGGAGAGAAAAAATCAGTAAGAAGATGAAGTATTTACAAGATTTAGTGCCTGGATGTAACAAAATCACAGGCAAGGCTGGTATGCTGGACGAAATTATCAACTATGTTCAATCTCTCCAAAGACAAGTAGAGTTCTTGTCCTTGAAACTTGCTACCATGAATCCAAGGACCGACTTCAACCTGGATACCTTCTTGGGGAAAGAGTTTCCTGCTTACGTCGCAGCCGGTTTTCCAACAGCGGCTGCTTCATCAGAAATGGCCAATTTGCCCTTCCTTCAGTTTCAGCCAGTGCCGCAGGGAATCACAAGCTGTGAGCTACATATGCCAATAGACCCCCCTCAATCTGCTCTTCAGATGACCACAAGCTCTTCCACATCTGTCCCTGAGATGTTCACCAACTCAACGTCCTTCTCTCAAGTACAACCCTTCACCACTTGGGACACTGATTTACAAAGTCTATACACTGGGGAGTTTCAGTGA 1101 46.68 MLHCLRSPEDFAAIGRPETMKWLHQPQKFQQPSFHSKSFGFSQSSQIDDLNSVLREIPNRSMKAENSWDNGLPGLGDFPTAGTDFRGHGMGFELPEIAGSSLEMDHSISRTSSCPLPDLGAATSVDGRELAGRNSVKKRKAEVALTEECKDQKIKRDEEEEESKIEEKHSEISPNASKVSGSPKPDYIHVRARRGQATDSHSLAERARREKISKKMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSLKLATMNPRTDFNLDTFLGKEFPAYVAAGFPTAAASSEMANLPFLQFQPVPQGITSCELHMPIDPPQSALQMTTSSSTSVPEMFTNSTSFSQVQPFTTWDTDLQSLYTGEFQ* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18512509 18514390 + Vvi4g985 Vvi4g985 785764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g985 366 MobiDBLite consensus disorder prediction 130 184 - -
Vvi4g985 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 246 IPR011598 GO:0046983
Vvi4g985 366 Pfam Helix-loop-helix DNA-binding domain 200 247 IPR011598 GO:0046983
Vvi4g985 366 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 363 IPR024097 GO:0006355
Vvi4g985 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 264 IPR036638 GO:0046983
Vvi4g985 366 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 18 363 - -
Vvi4g985 366 Coils Coil 142 162 - -
Vvi4g985 366 CDD bHLH_AtBPE_like 186 271 - -
Vvi4g985 366 Gene3D - 193 265 IPR036638 GO:0046983
Vvi4g985 366 SMART finulus 202 252 IPR011598 GO:0046983
Vvi4g985 366 MobiDBLite consensus disorder prediction 131 173 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g377 Vvi4g985 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14809 PF00010 HLH 1.40E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g985 - - vvi:100240994 726.857