Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g986 ATGGCAACGGAGTCATCGGAGGGAGAGGAAGAGGGCAAGATGATCGGAGGAAATCAGCACCTGGTTGTCGACGAAGACCTCCGTGAGATGGCCAAGAAGGCTGCTTGGAGCGTTAGTTCTTGCAAGGCTGGCAATGGCGTCCTTCTTCTTCGCGACGACAACCTCGATACCTATTGGCAATCCGACGGTGCTCAGCCTCATCTTGTAAACATTCAATTCCTCAAGAAAGTGAAGTTGCAACTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGGAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGGGAAACTTTTGTGAACACTTTTATGTTGCAAATTGCTATATTGTCAAATCACCTTAATGGGAGAGATACTCATGTGCGCCAGATCAAAGTTTATGGGCCTCCACCGAACCCCATCCCACGCCAGCCCTTCCAATTCACTTCAAGGGAGTTCATTACTTACTCTTCTGTGAGATGA 579 47.5 MATESSEGEEEGKMIGGNQHLVVDEDLREMAKKAAWSVSSCKAGNGVLLLRDDNLDTYWQSDGAQPHLVNIQFLKKVKLQLVVIYVDFKLDESYTPSKISIRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRETFVNTFMLQIAILSNHLNGRDTHVRQIKVYGPPPNPIPRQPFQFTSREFITYSSVR* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18515916 18518002 + Vvi4g986 Vvi4g986 785765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g986 192 SUPERFAMILY Galactose-binding domain-like 18 168 IPR008979 -
Vvi4g986 192 CDD APC10 28 167 IPR016901 GO:0005680|GO:0031145
Vvi4g986 192 Gene3D - 1 169 - -
Vvi4g986 192 PIRSF APC10 2 192 IPR016901 GO:0005680|GO:0031145
Vvi4g986 192 Pfam Anaphase-promoting complex, subunit 10 (APC10) 23 189 IPR004939 -
Vvi4g986 192 SMART APC10_2 27 191 IPR004939 -
Vvi4g986 192 PANTHER ANAPHASE-PROMOTING COMPLEX 10 11 192 IPR016901 GO:0005680|GO:0031145
Vvi4g986 192 ProSiteProfiles DOC domain profile. 6 192 IPR004939 -
Vvi4g986 192 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 11 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g986 K03357 APC10, ANAPC10, DOC1; anaphase-promoting complex subunit 10 - vvi:100256398 384.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0815 Cone12ag0766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011693 1 1 1 2 1 0 1 1 1 1 1 0 1 1 1 1 1 2 1 0 1 1 1 1 0 1 1 1 3 1 30