Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g987 ATGTCCTTCAAAAGCATTGTTCGTGAGCTAAAGGAAATGAAAGATGGAATTGGGAACATTTCTAGGCGTGGGGTAGAAGGGAAGCATTGGCGCAGACGAACAAGGTCATATATTGCCCCTGATCAAGGCCCCCTCTCTGGAGCCCTCCAACAGGGTCAGTGGGCGAATTTACCACCTGAATTGCTTTTGGATATAATCCAGAGGGTAGAAGAGAGTGAGACGTCATGGCCTGCTAGGAATGTTGTTGTATTTTGTGCTTCAGTTTGTAGGTCATGGAGGGAGATTACAAAGGAGATTGTCAAAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCACCTCTACATATCTTTTGTACTTTGGCCTGACACCTTCTGAGGGCCAGAGTGATAAACTGTTGCTTGCAGCCAGAAGGATCCGAAGGCCAACTAGCACAGATTTTGTGATATCTCTGGTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCGACGGTTCCACTCTAAGCAGGTATCTCCAAGAGTACCTGCATGTAACTACAGTGTGGCCACCATTTCCTATGAACTCAATGTCCTTCGCACCAGAGGACCTAGGAGAATGCAATGCACCATGCATTCCATTCCTATTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCCCACAACCCTTTGATGAGCAATTTTCTCCTTCACCATATCCGCTGATTCTTAAAAACAAAGCACCTAGATGGCATGAACATCTCCAGTGCTGGTGCCTAAATTTTAGAGGGCGTGTTACAGTGGCATCTGTCAAAAATTTCCAGCTTGTGGCATCAGTTGAGCCATCCCACAACCCTTTGCAATCTGCTTGA 1029 46.06 MSFKSIVRELKEMKDGIGNISRRGVEGKHWRRRTRSYIAPDQGPLSGALQQGQWANLPPELLLDIIQRVEESETSWPARNVVVFCASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRATSTYLLYFGLTPSEGQSDKLLLAARRIRRPTSTDFVISLVADDFSRASNTYVGKLRSNFLGTKFTIYDSQPPYDTAVQPNSRSSRRFHSKQVSPRVPACNYSVATISYELNVLRTRGPRRMQCTMHSIPISSIQEGGTAPTPTSFPQPFDEQFSPSPYPLILKNKAPRWHEHLQCWCLNFRGRVTVASVKNFQLVASVEPSHNPLQSA* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18518532 18521845 - Vvi4g987 Vvi4g987 785766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g987 342 Pfam F-box domain 54 101 IPR001810 GO:0005515
Vvi4g987 342 SUPERFAMILY F-box domain 47 98 IPR036047 GO:0005515
Vvi4g987 342 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Vvi4g987 342 Gene3D Tubby Protein; Chain A 112 342 IPR025659 -
Vvi4g987 342 SUPERFAMILY Tubby C-terminal domain-like 103 340 IPR025659 -
Vvi4g987 342 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 288 - -
Vvi4g987 342 PANTHER TUBBY-LIKE F-BOX PROTEIN 291 335 - -
Vvi4g987 342 Pfam Tub family 115 331 IPR000007 -
Vvi4g987 342 Gene3D - 48 100 - -
Vvi4g987 342 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Vvi4g987 342 PANTHER TUBBY-RELATED 1 288 - -
Vvi4g987 342 PANTHER TUBBY-RELATED 291 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g987 K19600 TUB, TULP; tubby and related proteins - vvi:100261485 673.315
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g987 Vvi18g960 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g808 . 1 305 TUB Transcription Factor Family AT1G76900 61.0 2.8e-121 432.6
Vvi5g364 ECH 1 351 TUB Transcription Factor Family AT1G76900 52.8 7.6e-111 397.9
Vvi18g1377 . 14 285 TUB Transcription Factor Family AT1G76900 56.8 9.3e-109 391.0
Vvi4g987 ECH 1 334 TUB Transcription Factor Family AT1G76900 51.3 1.0e-99 360.9
Vvi7g215 ECH 1 224 TUB Transcription Factor Family AT1G76900 58.3 1.6e-76 283.9
Vvi5g364 ECH 119 351 TUB Transcription Factor Family AT1G25280 56.0 6.5e-70 261.2
Vvi18g1377 . 109 285 TUB Transcription Factor Family AT1G25280 52.6 1.7e-62 236.5
Vvi18g960 ECH 179 368 TUB Transcription Factor Family AT1G25280 50.9 1.9e-61 233.0
Vvi4g987 ECH 175 334 TUB Transcription Factor Family AT1G25280 52.5 2.4e-48 189.5
Vvi12g808 . 173 305 TUB Transcription Factor Family AT1G25280 51.0 4.0e-43 172.2
Vvi5g364 ECH 61 351 TUB Transcription Factor Family AT5G18680 62.5 1.1e-99 360.1
Vvi18g960 ECH 115 368 TUB Transcription Factor Family AT5G18680 51.2 1.2e-75 280.4
Vvi4g987 ECH 113 331 TUB Transcription Factor Family AT5G18680 51.9 2.3e-60 229.6
Vvi7g215 ECH 57 223 TUB Transcription Factor Family AT5G18680 62.5 1.3e-55 213.8
Vvi18g960 ECH 1 367 TUB Transcription Factor Family AT2G18280 57.6 2.9e-119 425.6
Vvi4g987 ECH 1 335 TUB Transcription Factor Family AT2G18280 62.0 5.7e-115 411.4
Vvi5g364 ECH 1 350 TUB Transcription Factor Family AT2G18280 56.6 1.6e-109 393.3
Vvi19g106 . 3 325 TUB Transcription Factor Family AT2G18280 51.9 4.0e-92 335.5
Vvi12g808 . 1 301 TUB Transcription Factor Family AT2G18280 50.4 8.6e-87 317.8
Vvi7g215 ECH 1 211 TUB Transcription Factor Family AT2G18280 57.3 9.0e-68 254.6
Vvi5g364 ECH 1 351 TUB Transcription Factor Family AT2G47900 74.3 5.0e-154 541.2
Vvi18g960 ECH 1 368 TUB Transcription Factor Family AT2G47900 53.1 7.2e-113 404.4
Vvi7g215 ECH 1 224 TUB Transcription Factor Family AT2G47900 81.9 3.5e-107 385.6
Vvi4g987 ECH 1 333 TUB Transcription Factor Family AT2G47900 54.3 1.5e-102 370.2
Vvi19g106 . 1 326 TUB Transcription Factor Family AT2G47900 51.7 4.1e-100 362.1
Vvi9g941 . 42 270 TUB Transcription Factor Family AT1G16070 61.0 1.2e-72 270.4
Vvi5g364 ECH 12 351 TUB Transcription Factor Family AT1G43640 54.8 1.4e-107 386.7
Vvi18g1377 . 28 285 TUB Transcription Factor Family AT1G43640 61.4 7.6e-106 380.9
Vvi12g808 . 65 302 TUB Transcription Factor Family AT1G43640 61.7 3.2e-96 349.0
Vvi4g987 ECH 66 334 TUB Transcription Factor Family AT1G43640 52.0 1.3e-81 300.4
Vvi7g215 ECH 10 225 TUB Transcription Factor Family AT1G43640 58.3 3.5e-74 275.8
Vvi18g960 ECH 28 368 TUB Transcription Factor Family AT1G47270 63.2 5.4e-134 474.6
Vvi5g364 ECH 1 351 TUB Transcription Factor Family AT1G47270 54.3 3.8e-103 372.1
Vvi4g987 ECH 32 331 TUB Transcription Factor Family AT1G47270 58.0 2.3e-100 362.8
Vvi12g808 . 48 306 TUB Transcription Factor Family AT1G47270 50.2 1.6e-77 287.0
Vvi7g215 ECH 1 223 TUB Transcription Factor Family AT1G47270 55.3 4.8e-66 248.8
Vvi19g106 . 1 326 TUB Transcription Factor Family AT1G53320 79.0 1.5e-152 536.2
Vvi5g364 ECH 4 351 TUB Transcription Factor Family AT1G53320 52.8 2.5e-99 359.4
Vvi4g987 ECH 44 335 TUB Transcription Factor Family AT1G53320 53.2 1.2e-82 303.9
Vvi7g215 ECH 1 199 TUB Transcription Factor Family AT1G53320 56.3 1.1e-62 237.7
Vvi5g364 ECH 61 351 TUB Transcription Factor Family AT3G06380 62.6 3.2e-99 358.6
Vvi18g960 ECH 119 368 TUB Transcription Factor Family AT3G06380 51.9 6.1e-74 274.6
Vvi4g987 ECH 117 330 TUB Transcription Factor Family AT3G06380 51.1 8.0e-58 221.1
Vvi7g215 ECH 61 216 TUB Transcription Factor Family AT3G06380 64.7 2.4e-54 209.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14810 PF01167 Tub 2.10E-82 CL0395 Vvi TF