Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g987 ATGTCCTTCAAAAGCATTGTTCGTGAGCTAAAGGAAATGAAAGATGGAATTGGGAACATTTCTAGGCGTGGGGTAGAAGGGAAGCATTGGCGCAGACGAACAAGGTCATATATTGCCCCTGATCAAGGCCCCCTCTCTGGAGCCCTCCAACAGGGTCAGTGGGCGAATTTACCACCTGAATTGCTTTTGGATATAATCCAGAGGGTAGAAGAGAGTGAGACGTCATGGCCTGCTAGGAATGTTGTTGTATTTTGTGCTTCAGTTTGTAGGTCATGGAGGGAGATTACAAAGGAGATTGTCAAAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCACCTCTACATATCTTTTGTACTTTGGCCTGACACCTTCTGAGGGCCAGAGTGATAAACTGTTGCTTGCAGCCAGAAGGATCCGAAGGCCAACTAGCACAGATTTTGTGATATCTCTGGTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCGACGGTTCCACTCTAAGCAGGTATCTCCAAGAGTACCTGCATGTAACTACAGTGTGGCCACCATTTCCTATGAACTCAATGTCCTTCGCACCAGAGGACCTAGGAGAATGCAATGCACCATGCATTCCATTCCTATTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCCCACAACCCTTTGATGAGCAATTTTCTCCTTCACCATATCCGCTGATTCTTAAAAACAAAGCACCTAGATGGCATGAACATCTCCAGTGCTGGTGCCTAAATTTTAGAGGGCGTGTTACAGTGGCATCTGTCAAAAATTTCCAGCTTGTGGCATCAGTTGAGCCATCCCACAACCCTTTGCAATCTGCTTGA 1029 46.06 MSFKSIVRELKEMKDGIGNISRRGVEGKHWRRRTRSYIAPDQGPLSGALQQGQWANLPPELLLDIIQRVEESETSWPARNVVVFCASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRATSTYLLYFGLTPSEGQSDKLLLAARRIRRPTSTDFVISLVADDFSRASNTYVGKLRSNFLGTKFTIYDSQPPYDTAVQPNSRSSRRFHSKQVSPRVPACNYSVATISYELNVLRTRGPRRMQCTMHSIPISSIQEGGTAPTPTSFPQPFDEQFSPSPYPLILKNKAPRWHEHLQCWCLNFRGRVTVASVKNFQLVASVEPSHNPLQSA* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18518532 18521845 - Vvi4g987 Vvi4g987 785766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g987 342 Pfam F-box domain 54 101 IPR001810 GO:0005515
Vvi4g987 342 SUPERFAMILY F-box domain 47 98 IPR036047 GO:0005515
Vvi4g987 342 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Vvi4g987 342 Gene3D Tubby Protein; Chain A 112 342 IPR025659 -
Vvi4g987 342 SUPERFAMILY Tubby C-terminal domain-like 103 340 IPR025659 -
Vvi4g987 342 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 288 - -
Vvi4g987 342 PANTHER TUBBY-LIKE F-BOX PROTEIN 291 335 - -
Vvi4g987 342 Pfam Tub family 115 331 IPR000007 -
Vvi4g987 342 Gene3D - 48 100 - -
Vvi4g987 342 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Vvi4g987 342 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Vvi4g987 342 PANTHER TUBBY-RELATED 1 288 - -
Vvi4g987 342 PANTHER TUBBY-RELATED 291 335 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g987 Vvi18g960 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14810 PF01167 Tub 2.10E-82 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g987 K19600 - vvi:100261485 673.315