Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g988 ATGATTCTTCCGGCCGCGGACGCTGCCATCAAGAAATACCAATTTGATGTTCAAGTGAGAAATGTGAGTAGATTGTGCCATGCAAAGCCCATAGTGACCGTAAATGGGATGTTCCCGGGGCCTACTATTTATGCTAGGGAAGGAGATAGAGTCATCATCAATGTCACCAATCATGCACAATATAACATGTCAATTCACTGGCATGGAATTAAGCAATTTCGTAATGGTTGGGCTGATGGACCCGCTTATATCACACAGTGTCCTATCCAAACTGGGAGTGCCTACACCTATGATTTCAATGTAACTGGTCAAAGGGGAACATTGTGGTGGCATGCACATATTCTTTGGCTAAGGGCAACAGTCTACGGCGCACTTGTGATCATGCCAAAACCAGGAACCCCATTTCCTTTTCCTCAGCCGTACAGTGAGGTTAACCTTCTGTTAGGAGAATGGTGGAACAACGACATCGAAGCGCTTGTGAAGCAAGGGAACAGCCGGGGCTTGCCACCCAATATGTCAGATGCCCACACAATCAATGGGAAGCCAGGGCCACTTTTTCCATGCTCTGAGAAACATACATTTGCAATGGAGGTTGAATCTGGGAAGACATACCTCTTGAGAATCATCAATGCTGCTCTCAACGATGAGCTTTTCTTTGCCATTGCCGGTCATGATATGACAGTCGTGGAGATCGATGCTGTTTACACAAAGCCATTCACCACTCAAGCTTTACTAATTGCGCCTGGCCAGACCACTAACGTTCTGGTTCAAGCCAACCAAGCGCCCAACAGATACTTCATGGCCGCTAGGCCTTTCATGGATGCCCCACTTCCAGTGGACAAACAAATGGCCACAGGCATACTCCAATACAAAGGAGTTCCGAACACTGTTCTCCCAAGCCTTCCCCAATTGCCAGCATCCAATGACACTGCATTCGCATTGAGCTACAACAAGAAGCTCAGGAGCTTAAACACCCCACAATTTCCAGTTAATGTTCCTCTGAAGGTTGATAGGAACCTCTTTTACACCATTGGGTTGGGGAGGAATCCTTGCCTCACATGCGTCAACGGAACCCGACTTACTGGTTCGTTAAACAACATCTCTTTTGTGATGCCGAATATCGGGCTTCTTCAAGCACACTACTCCAAGATTAAAGGAGTGTTCAGAACGGATTTCCCAGACCGCCCTTCTACTCCATTCAATTACACGAGTGCACCGCTAACAGCCAATCTTGGGACTTCTCAAGGCACTAGACTAAGTAAGCTTGCCTTCAACTCCACAGTTGAGTTGGTATTACAGGACACCAATCTTCTAACAGTTGAGTCGCACCCGTTTCATCTCCACGGCTATAACTTCTTTGTTGTTGGAAGCGGTATTGGAAACTTCGATCCTGCCAAAGACCCAGCTAACTATAATCTGATTGATCCTCCCGAGAGAAATACAGTTGGGGTTCCCACTGGTGGGTGGACTGCTATTCGATTTCGAGCCGATAATCCAGGTGTTTGGTTCATGCACTGTCATTTGGAGCTTCACACTGGTTGGGGATTGAAAATGGCATTTGTAGTAGAAGATGGAGAAGGGCCTGACCAATCTGTTCTGCCTCCTCCCAAGGATCTTCCACCATGCTAA 1629 47.08 MILPAADAAIKKYQFDVQVRNVSRLCHAKPIVTVNGMFPGPTIYAREGDRVIINVTNHAQYNMSIHWHGIKQFRNGWADGPAYITQCPIQTGSAYTYDFNVTGQRGTLWWHAHILWLRATVYGALVIMPKPGTPFPFPQPYSEVNLLLGEWWNNDIEALVKQGNSRGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHDMTVVEIDAVYTKPFTTQALLIAPGQTTNVLVQANQAPNRYFMAARPFMDAPLPVDKQMATGILQYKGVPNTVLPSLPQLPASNDTAFALSYNKKLRSLNTPQFPVNVPLKVDRNLFYTIGLGRNPCLTCVNGTRLTGSLNNISFVMPNIGLLQAHYSKIKGVFRTDFPDRPSTPFNYTSAPLTANLGTSQGTRLSKLAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPAKDPANYNLIDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKMAFVVEDGEGPDQSVLPPPKDLPPC* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18526670 18529110 + Vvi4g988 Vvi4g988 785767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g988 542 ProSitePatterns Multicopper oxidases signature 1. 500 520 IPR033138 -
Vvi4g988 542 SUPERFAMILY Cupredoxins 10 154 IPR008972 -
Vvi4g988 542 SUPERFAMILY Cupredoxins 137 321 IPR008972 -
Vvi4g988 542 Gene3D - 4 129 IPR008972 -
Vvi4g988 542 TIGRFAM laccase: laccase 8 542 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi4g988 542 SUPERFAMILY Cupredoxins 333 542 IPR008972 -
Vvi4g988 542 CDD CuRO_2_LCC_plant 144 290 IPR034285 -
Vvi4g988 542 Pfam Multicopper oxidase 144 292 IPR001117 -
Vvi4g988 542 PANTHER LACCASE 8 542 - -
Vvi4g988 542 CDD CuRO_3_LCC_plant 387 525 IPR034289 GO:0005507
Vvi4g988 542 Gene3D - 141 325 IPR008972 -
Vvi4g988 542 ProSitePatterns Multicopper oxidases signature 2. 505 516 IPR002355 GO:0005507
Vvi4g988 542 Gene3D - 353 542 IPR008972 -
Vvi4g988 542 Pfam Multicopper oxidase 17 130 IPR011707 GO:0005507
Vvi4g988 542 CDD CuRO_1_LCC_plant 13 129 IPR034288 GO:0005507
Vvi4g988 542 Pfam Multicopper oxidase 393 525 IPR011706 GO:0005507|GO:0016491
Vvi4g988 542 PANTHER MULTI-COPPER OXIDASE 8 542 IPR045087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g988 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100246084 1125.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g988 Blo04g00914 Blo16g00049 . . Bpe15g00426 Bpe13g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1630 Cone9ag1555 . . . . . . Bda11g01862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484