Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g990 | ATGAATGATCTCATGACAAAATCGTTCTTAAGTTATGTGGAACTAAAGAAACAAGCAGAGATGGATCTTGAAGCAGAAGCAGAAGCAGACATAGAAATAGGCAAACTCAAGCCTAAAGATGAAGAGAACCTCTCTCAGTTCTTTGAAGAAGTGGCCGCTATCAAGACTGTCATGGAAGAGATTACTAATCTCGTCCTTGATCTTCACAACCTGAATGAAGAGACTAAATCAACTCACAGCGCTGAGGTCCTTCCATATAGAGAAGGAAGTCCAGTTGATAGGACGAGAATGTCGGTCACGAATGGATTGAGAAGTAAGCTTAGGGACATGATGAATGATTTCCATTCACTGCGGGAGAGGATCTTATGGGATCATAGAGAAACTCTCAAGAGAAGGTACTATAATGCCACTGGAAGTGAAGCAAGCGAGGAAGTGGTGGAGAAAATGATGACAGGAAGCGTACAAATAGAAGCATTTGAAGGAAAAACAGGAGGGGATTTGGTGAACAGAGAGAGGAATGAAGCCTTGAGGGAGATTCAGAGAAGCTTGGATAAGCTTCGTCAAGTATTACTTGACATGGCTGTTTTGGTTGGGAGTCAAGGCGAGAAGATGGATGATATAGAGGAGAATGTGGCAATTGCAGGGAACTTCATCAGTGGTGGAACCAATAGTCTTGTCTATGCCAAGCAGATGAAGAAGGGGAAGAAATGGGTGTATTGGGTTTGGGCTGTGGGGCTCATCATATTGCTGGTGTGCTTCATTTCAATGCTCACTTCTTAA | 780 | 43.08 | MNDLMTKSFLSYVELKKQAEMDLEAEAEADIEIGKLKPKDEENLSQFFEEVAAIKTVMEEITNLVLDLHNLNEETKSTHSAEVLPYREGSPVDRTRMSVTNGLRSKLRDMMNDFHSLRERILWDHRETLKRRYYNATGSEASEEVVEKMMTGSVQIEAFEGKTGGDLVNRERNEALREIQRSLDKLRQVLLDMAVLVGSQGEKMDDIEENVAIAGNFISGGTNSLVYAKQMKKGKKWVYWVWAVGLIILLVCFISMLTS* | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18535064 | 18535964 | - | Vvi4g990 | Vvi4g990 | 785769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g990 | 259 | PANTHER | SYNTAXIN-112 | 86 | 255 | - | - | |
Vvi4g990 | 259 | PANTHER | SYNTAXIN-112 | 3 | 84 | - | - | |
Vvi4g990 | 259 | SUPERFAMILY | t-snare proteins | 43 | 221 | IPR010989 | GO:0016020|GO:0016192 | |
Vvi4g990 | 259 | CDD | SNARE_syntaxin1-like | 170 | 226 | - | - | |
Vvi4g990 | 259 | PANTHER | SYNTAXIN | 86 | 255 | IPR045242 | - | |
Vvi4g990 | 259 | PANTHER | SYNTAXIN | 3 | 84 | IPR045242 | - | |
Vvi4g990 | 259 | Coils | Coil | 54 | 74 | - | - | |
Vvi4g990 | 259 | Pfam | Syntaxin | 78 | 201 | IPR006011 | GO:0016020 | |
Vvi4g990 | 259 | Gene3D | - | 29 | 218 | - | - | |
Vvi4g990 | 259 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 166 | 228 | IPR000727 | - | |
Vvi4g990 | 259 | SMART | SynN_4 | 39 | 126 | IPR006011 | GO:0016020 | |
Vvi4g990 | 259 | Coils | Coil | 169 | 189 | - | - | |
Vvi4g990 | 259 | SMART | tSNARE_6 | 161 | 228 | IPR000727 | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g990 | K08486 | K02201 | vvi:100244526 | 473.781 |