Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g990 ATGAATGATCTCATGACAAAATCGTTCTTAAGTTATGTGGAACTAAAGAAACAAGCAGAGATGGATCTTGAAGCAGAAGCAGAAGCAGACATAGAAATAGGCAAACTCAAGCCTAAAGATGAAGAGAACCTCTCTCAGTTCTTTGAAGAAGTGGCCGCTATCAAGACTGTCATGGAAGAGATTACTAATCTCGTCCTTGATCTTCACAACCTGAATGAAGAGACTAAATCAACTCACAGCGCTGAGGTCCTTCCATATAGAGAAGGAAGTCCAGTTGATAGGACGAGAATGTCGGTCACGAATGGATTGAGAAGTAAGCTTAGGGACATGATGAATGATTTCCATTCACTGCGGGAGAGGATCTTATGGGATCATAGAGAAACTCTCAAGAGAAGGTACTATAATGCCACTGGAAGTGAAGCAAGCGAGGAAGTGGTGGAGAAAATGATGACAGGAAGCGTACAAATAGAAGCATTTGAAGGAAAAACAGGAGGGGATTTGGTGAACAGAGAGAGGAATGAAGCCTTGAGGGAGATTCAGAGAAGCTTGGATAAGCTTCGTCAAGTATTACTTGACATGGCTGTTTTGGTTGGGAGTCAAGGCGAGAAGATGGATGATATAGAGGAGAATGTGGCAATTGCAGGGAACTTCATCAGTGGTGGAACCAATAGTCTTGTCTATGCCAAGCAGATGAAGAAGGGGAAGAAATGGGTGTATTGGGTTTGGGCTGTGGGGCTCATCATATTGCTGGTGTGCTTCATTTCAATGCTCACTTCTTAA 780 43.08 MNDLMTKSFLSYVELKKQAEMDLEAEAEADIEIGKLKPKDEENLSQFFEEVAAIKTVMEEITNLVLDLHNLNEETKSTHSAEVLPYREGSPVDRTRMSVTNGLRSKLRDMMNDFHSLRERILWDHRETLKRRYYNATGSEASEEVVEKMMTGSVQIEAFEGKTGGDLVNRERNEALREIQRSLDKLRQVLLDMAVLVGSQGEKMDDIEENVAIAGNFISGGTNSLVYAKQMKKGKKWVYWVWAVGLIILLVCFISMLTS* 260
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 18535064 18535964 - Vvi4g990 Vvi4g990 785769
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g990 259 PANTHER SYNTAXIN-112 86 255 - -
Vvi4g990 259 PANTHER SYNTAXIN-112 3 84 - -
Vvi4g990 259 SUPERFAMILY t-snare proteins 43 221 IPR010989 GO:0016020|GO:0016192
Vvi4g990 259 CDD SNARE_syntaxin1-like 170 226 - -
Vvi4g990 259 PANTHER SYNTAXIN 86 255 IPR045242 -
Vvi4g990 259 PANTHER SYNTAXIN 3 84 IPR045242 -
Vvi4g990 259 Coils Coil 54 74 - -
Vvi4g990 259 Pfam Syntaxin 78 201 IPR006011 GO:0016020
Vvi4g990 259 Gene3D - 29 218 - -
Vvi4g990 259 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 166 228 IPR000727 -
Vvi4g990 259 SMART SynN_4 39 126 IPR006011 GO:0016020
Vvi4g990 259 Coils Coil 169 189 - -
Vvi4g990 259 SMART tSNARE_6 161 228 IPR000727 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi3g373 Vvi4g990 ECH
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g990 K08486 K02201 vvi:100244526 473.781