Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g992 ATGTCCGAAATGGAAAGGGCAGACAGAGCAATGATGTCAACAGCTTCATTCAGGATCTTCAATTCCTCGGCTCTCAATCGCCGCCACCTCTCCGCTTCACTTCTTAACAAATCTACTTCTCTCAAATTCCCTCCCACCCTTCACCGTCCTTCACTCTGTCGGAGGGTTTCGCCGTCTTCTCCGCTCTTCGTCGCTTTTCCCAACGTTGTTTCCATAAACCCCAAATGTTTCGCTCGCATTCGCGCTTCCTCATCGATCGGGCCTTTTCCGCCGTGCCCTTCTCCAAATTCTAATCCATTTGGGTTTCTTCTATCTCTCTCTCATTCTCACTCCTCTCCTCCGCTGGAGTTCGATTCCAATGAGAAGGTTCTGGAGTGGAATCGAGCTCCCGAGGGAGGCGTTAATGGCGGAAGTGTAAGGGATCGTGGTCCTGCCGTCACGGTGGTGTTGCTGGGTTGGCTTGGAGCGAAGCCGAAGCACTTGAGGAGGTACGTGGATTTGTATACTTCCAGGGGAATTCACGCCGTAACTTTCGTTGTTCCCGTGAGAGAGGTGCTCTGGATTGATTTGGGAAGGAGGGTTGAGAAACGGATCGCGGAGATGACTCAGGAGCTGGTTTCGTGGTTATCGGAAACGGAAAATGATGGTCGCGAGCGGCACTTGCTTTTTCACACCTTCAGCAATACCGGTTGGTTTGCTTATGGTGCAATTCTTGACCACTTGCAGGGTAGACCGGACCTAATGGAGAAGATCAAAGGATGTGTCGTTGATTCGGGAGGTGACCCGGAAATAAATCCTCAGGTCTGGGCAGCTGGATTTTCTGCTGCACTGCTGAAAAAAAACAGCTCTTCAGCATACTCTTTAGTTGAAGTCACAGAAAGAAATGAATCCAAAAGCAAAGTAGATTCATCAAAGGTGCAAGAAAAGGAGCCTCTGATAATTGAAACCATGCTTTTGTCGGTATTAGAGTTCTTCTTCTCTGTTATTCTAAGGTTGCCTGATGTAAATCGGAGGTTAACAAAGATCATCTCCATCCTCTCAAAGAACCAGCCTCCCTGTTCACAACTTTACCTGTATAGCACAGCTGATAAAGTCATTCCATATCACTCAGTAGAAATGTTTATCAATGAGCAGATGAGGATGGGAAAAAAAGTGCGGTCCTTTAACTTTGGATTATCCCCCCATGTAGACCATTACAGGACTTTCCCAAATCTATATTCTTCAGAAATACATAATTTCTTGAAGGAGTGTTTGGCTGAAGTCAAGAAGATTTTTCTTTCCTCCAGCGTCAGCTCCTGGCCGCCCCTCCACCTCTCTCTCTCATTTCTCACTTCCTCACCATCACACCTCCCGTCGCCGCCTCTCAGTCCACCCTCAGCGTCCTCGTCGCTGCGTGGCGGTGAACGTGTGTAG 1413 48.27 MSEMERADRAMMSTASFRIFNSSALNRRHLSASLLNKSTSLKFPPTLHRPSLCRRVSPSSPLFVAFPNVVSINPKCFARIRASSSIGPFPPCPSPNSNPFGFLLSLSHSHSSPPLEFDSNEKVLEWNRAPEGGVNGGSVRDRGPAVTVVLLGWLGAKPKHLRRYVDLYTSRGIHAVTFVVPVREVLWIDLGRRVEKRIAEMTQELVSWLSETENDGRERHLLFHTFSNTGWFAYGAILDHLQGRPDLMEKIKGCVVDSGGDPEINPQVWAAGFSAALLKKNSSSAYSLVEVTERNESKSKVDSSKVQEKEPLIIETMLLSVLEFFFSVILRLPDVNRRLTKIISILSKNQPPCSQLYLYSTADKVIPYHSVEMFINEQMRMGKKVRSFNFGLSPHVDHYRTFPNLYSSEIHNFLKECLAEVKKIFLSSSVSSWPPLHLSLSFLTSSPSHLPSPPLSPPSASSSLRGGERV* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18542671 18546815 - Vvi4g992 Vvi4g992 785771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g992 470 MobiDBLite consensus disorder prediction 449 470 - -
Vvi4g992 470 SUPERFAMILY alpha/beta-Hydrolases 141 419 IPR029058 -
Vvi4g992 470 PANTHER UNCHARACTERIZED 48 423 IPR008547 -
Vvi4g992 470 Pfam Eukaryotic protein of unknown function (DUF829) 147 414 IPR008547 -
Vvi4g992 470 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 48 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g992 - - - vvi:100256387 798.505
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g992 . . . Bda10g00138 . . . Bma15g00995 . . Cma03g00739 . Car03g00675 . . . Cpe10g00621 Bhi03g01316 . . . Hepe04g1524 . . Cla01g01917 Cam01g2004 Cec04g1661 Cco04g1722 Clacu01g2023 Cmu01g1899 Cre04g1576 . . Cone6ag1634 . Lsi01g00668 . . Cme08g00856 . Blo06g00135 . . . . . . . Cmo03g00768 . . . . . . . . . . . . . . . . . . . . . . Csa06g03249 Chy02g00639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002433 5 3 5 4 2 1 2 1 2 2 1 1 2 1 2 1 1 3 2 1 2 3 2 2 1 1 1 2 1 4 61