Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g994 ATGGAGAATTCCACCAGATACGGCAGAACCTCTCTGCCTCATTTCCCACCTTCCAAGTCAAGGCGGAGCGGTTACGAACCTTCTGATACGGAGACTGACTGGCAGGATAGTCCGTGGCGTGACCGCAATGAAACTAACGGACCTTTGCGCAGTGAACTGCCCAGAACTCCTTTCGACCCGTTGCCAAAGATCAGTCCCATGATACCCAGCCGGAGACACTCCTCCAAGATTGAATATGATGCCTCTTCTTCTACCAAGGCTTCCGGAACTAGCCCAACTAGAAGGAGGCACAGTAAGTCGCCATACAAGCCACACAAAGGTGAAGCGGTTAGTAGAACGAGTGAGAGGCCAAACTCCAGTCATAGATCAGCATCTGCCCCAAGAACAAAAGCAGCAGAGAAGGACAGACAGATCAACTATGGCCGTCTGGAGCAAAGAAGTGAAAGAACCCCCTCACCGTTGGCAAAGAGCACGGCTCGGAAACAGATTGAATCTTCCCCCAAGAAAGGTCCCTCAGTCAGCGAAATCAACGTAATGGTGGCTACTGAAAGGCTCGCCAGAGGAGGAGTCCGTGATTTTTCGAAGTTCGACAGCACGGACTCCAATTTACCTGGGGATATCTTTTTCTCCCATGATTACACAGCCTTGGCTTTGCAGAAGAATGTATTGCAAAAAAACAATGTTTTTGAAAGCAGATTTCCCTCAAACCCAAATCCCAATACAATCACCAAAAGAAATTTGGCCACTAATCAAAGAAGCAGAGGCAATGATATTTTTTATCAGAACACTCAAGGGAATTTGTCCAGTACTGTTCTATCAGGAACAGCTCCCAGCTCTGCTGTAAGCAGAGAGAGTAGTGGTAGAGTCAGCACGGAGAGTAGTAAGATGAGTGATGCTAGTGGGAGCTTGAAAAAATTTACAGCCAACAGAAGAAAGAGCCATTCAGATGCCTGGTTTGCTTGCATGAGGAAGGGGCCTTGCAAAACCAGAAAATCACCTGAAAAGAGAGACGTTGATGAAACATCATTTATTCAGAAGGCACTTGTGGTGGAAAACCTGAGACAATTTTGGGCTGATAAGCATCGGCCTGCTTCCTTGAATGGTTTCACGTTGCACAAACAAGAAGCTCAACTTCTCAAGCAACTCGTATCTAGTGATATCTGTCCACATGTTCTTTTCAAAGGACCTTCTGGTTCAGGGAAGAAAGCACTAACTATGGCTCTTTTGCGTGAAATATATGGTGATGCATCTTGGAATATTTCTCATGAGTTAAGATCTTTCCATGTTCAGGAAAAAAGGCCCATGCAAGTAGTGGTACCTTTAACATCCAGTGCTCATCATGTGGAGCTTAATGTTAACTTGGAACCATATGCTAGACATGCATTGATGGCTATAGTGAAACAAATCAGAAGCAATTGTGAAATCACCCCCGAACATGGTTCCATCTTGTTGATTTCAGTATTAGTTCTCTATGAGGTTGACAAAGCAGCAGAGAATATTCAGTACTTGATAAAATGGATCATGGACTGCTACACAGATGCTTGTCAACTCATAATGTGCTGTGAAGATGATGTAGATGTCCTTGAATCAGTGAAAAACCGGTGCAAAGTTATTAAGCTTGAGGCTCCTGTAACTCACGAAATTATGGAGGTTCTTATTCAGATAGCAAGGAAGGAGGACTTTGACCTACCCATGAGCTTTGCTGCTAAGATTGCCACAAAATCAAAGCAGGACCTGAGGAAAGCAATCATGGCTCTTGAAGCGTGCAAAGCACACAACTATCCTTTCCTTGATGACCAACCAATTCCACTTGGATGGGAAGAGGTCCTGGTAGAACTAGCTGCTGAAGTCTTAGTTGATCCATCACCTAACAGATTGTTTTATTTACGGGGAAAAATTCAAAAGCTTCTTGTGGATTTTGTTCACCCCAAACTGATTCTTCAGAAGCTTGTTGAACAATTTCTTAAAGGGACTGATGCTAGTCAAAAGAGGGACCTTTATTATTGGCATGCTTATTATGATAAGAGACTTCCAGCAGGAACAAGTGCTTTACTGAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATACGCAGGAAGAGTTTGGGCAACCGTCAGTACACATAA 2127 44.01 MENSTRYGRTSLPHFPPSKSRRSGYEPSDTETDWQDSPWRDRNETNGPLRSELPRTPFDPLPKISPMIPSRRHSSKIEYDASSSTKASGTSPTRRRHSKSPYKPHKGEAVSRTSERPNSSHRSASAPRTKAAEKDRQINYGRLEQRSERTPSPLAKSTARKQIESSPKKGPSVSEINVMVATERLARGGVRDFSKFDSTDSNLPGDIFFSHDYTALALQKNVLQKNNVFESRFPSNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSSAVSRESSGRVSTESSKMSDASGSLKKFTANRRKSHSDAWFACMRKGPCKTRKSPEKRDVDETSFIQKALVVENLRQFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGDASWNISHELRSFHVQEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIVKQIRSNCEITPEHGSILLISVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESVKNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKAHNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHPKLILQKLVEQFLKGTDASQKRDLYYWHAYYDKRLPAGTSALLKLEEFVAKFMSIRRKSLGNRQYT* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18551003 18557058 + Vvi4g994 Vvi4g994 785773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g994 708 MobiDBLite consensus disorder prediction 144 172 - -
Vvi4g994 708 Gene3D - 545 601 - -
Vvi4g994 708 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 161 707 - -
Vvi4g994 708 Gene3D - 354 543 IPR027417 -
Vvi4g994 708 MobiDBLite consensus disorder prediction 24 48 - -
Vvi4g994 708 MobiDBLite consensus disorder prediction 127 143 - -
Vvi4g994 708 Gene3D - 605 698 - -
Vvi4g994 708 MobiDBLite consensus disorder prediction 1 174 - -
Vvi4g994 708 MobiDBLite consensus disorder prediction 270 302 - -
Vvi4g994 708 SUPERFAMILY post-AAA+ oligomerization domain-like 604 697 IPR008921 GO:0003677|GO:0006260
Vvi4g994 708 PANTHER OS02G0704966 PROTEIN 161 707 - -
Vvi4g994 708 CDD AAA 374 412 - -
Vvi4g994 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 589 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g994 K10756 RFC3_5; replication factor C subunit 3/5 - vvi:100852980 1170.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38