Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g997 ATGGCTAACCATGATGGAGAAATAAGCTCCAAAACTTCGGGATTCCCTCATCATGTAGTTCTCAATGAAAGGATCCTTTCTTCTATGTCACGGAGATCTATTGCTGCTCATCCTTGGCATGACTTAGAGATTGGACCGGGTGCTCCATCAGTTTTCAATTGCGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCAAGTGGCTTGATAAAGGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATGCCTATGATTGATCAGGGTGAAAAGGATGACAAAATAATAGCAGTGTGTGCTGATGACCCTGAGTTCCGCCACTACAAAGACATCAAAGAGATTCCCCCACATCGCCTTGCTGAGATCCGCCGCTTCTTTGAGGACTACAAGAAGAACGAAAACAAAGAAGTTAACGTGAACGACTTTCTTCCAGCTGATTCTGCCATTGAAGCCATCAAGTACTCAATGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGA 648 44.29 MANHDGEISSKTSGFPHHVVLNERILSSMSRRSIAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLILMQEPVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKEIPPHRLAEIRRFFEDYKKNENKEVNVNDFLPADSAIEAIKYSMDLYASYIVESLRQ* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18563503 18568390 + Vvi4g997 Vvi4g997 785776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g997 215 Hamap Inorganic pyrophosphatase [ppa]. 50 206 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi4g997 215 Gene3D Inorganic pyrophosphatase 33 211 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi4g997 215 PANTHER BNAC07G03580D PROTEIN 18 209 - -
Vvi4g997 215 CDD pyrophosphatase 51 203 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi4g997 215 PANTHER INORGANIC PYROPHOSPHATASE 18 209 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi4g997 215 Pfam Inorganic pyrophosphatase 54 205 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi4g997 215 ProSitePatterns Inorganic pyrophosphatase signature. 101 107 - -
Vvi4g997 215 SUPERFAMILY Inorganic pyrophosphatase 31 209 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g997 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - vvi:100254798 433.335
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126