Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g999 ATGGAAAAATTCTCCCATTCCAGAAACCAAACATCCTCAGCTCTTTCTAAGAAAATCTGCAATGGCAATGGCTTCAGCGACAGGTCTGCCTACGATGACGTTTTCGGCGGTCCACCCAAGTTCGGGGTCCCGACTATCTCGCCTCGTGTGGAGGACTACACTGAGATTTTCGGAAGCTTTCATGCCTCACGCGCTTCCTCTATCCCGGTTTTGGATCTTCCCGCTGTTGACGAGGCCGATGTTTTCTTTGATGTTCAGGAGGTCGATTACTCGGATATTTTTGGCGGTTTCCGGGGTCTAGATTTTGCCGTTTCGTATGACGAGTTGCTTGGGCAGTCTAAGGATGGGGATGATTCGTCCGAGGAAGCTTGGACTCCAGCTGAAACTGGATCTCTGTCAGAAGAGTCAGATTATTCTGGGAAAAATGAATCCATGTCATATGGAGATGCTCACCAATCATTTGATGATGGTAAGGACTTCAACATTTCTTTTCATAAAGCTAATCAAAGAAGCAAAGGAGATATGTCAAATGGGGCTCATGTTACACAACTAGATGCAGTTCCTGGATATACTGTTGTGGTTGATGGAACTCCTTTGCAAAAGACAAATTATGAGAATCCACCCCTGTGGGTAACTGGTGATATCAGTCTCAGTAGGAGTTTTGGTGGGGGGAAAATCGAAGAAAAGCATCTCTGGAAAACCATGTCCTACCCACAAAATAGCAATGATGGCATGCATACATTTGAAATTGAACCTCAAGTAGGATATGGTGAAAATGGTTCTCACTCTAGTGAGACGTTTATAACTGTATCTGAAATCAGCCTTAGAACTCAGCCCTCTCCCGTGCCACCACCCTTGAGACCACCACCTATAGTAGATGTCAAAAAAGGAGATTCCAGTAGATCAGCTTCACAACTTAAAGCTAATAAGAATTATGCTTTCGAAGGGACTGCAGGTGGCAGTTCACCAGGAAGTTCTCCGCCTTTCTTTGATGTGGAGGTAGATGCCAGTTCATCCGCTGCGGCCTCTGCTGCGGCTATGAAAGAAGCAATGGAGAAAGCACAAGCAAAACTCAAAAATGCAAAAGAAATAATGGAGAGGAGGAAAGAGGGTCTTCAGAGCCGAACAAAGCTGGGTTCCAGAAATGATACAAAACACAAGGAGGGAAAGTTGAGTAGCATATCCAACAGTTTGAAAGATGAGAAAGTGCAGGGATCGTGTGAAACTCCGAAAGATTTTGTCAGAGAAGCAAGCCAAAAAGAAATGAAGACAACCCAGGTGCTTTCAGATTCTCGAGAAGGGGAAGCATTTTTAAATGTGGCTAAAAAATCTGCAGAGGGAAGGCATGGGAAGGAATCTTGGTCATCTCAAGAGTCTTATAAAACTGAAGGAACTGGAAAATGGAAAGAAGCAACAGAGTTTTATGAACTTGTAAGAGGAGATAAATTTAGAAAGGAGCAGGCAAACAATGAAAAAGTTTTGGTGAAAAATAAGAAGGTCATTGAAAGTAGGCAGAAGGAGAAAAGGGCAGCCATTGAATCATTTGAGCAGCAAGAAGAAAGTGATAAGAAAACAAATGCAGCCCAAGAGGCTCATGGATGGGAGGAAAATGAAGCTAAAGAGGCATGCAGGCATGAAGAACATGAGAAAGTTGAAGTGGCCCATGTGTTATGTGGGTGGAAAGAGAATGAGAAAACATGGAGAGTGGGCATGGAGCATGAAGAAGCTGAGCACAAACTAAATGTAGCTGATGAATGGGAAGAACATGATATCTTGATAGAGATACAGCAGAAACAAAATGAGGTGGAAGTTAAGGAAGCTATGAAGCAGGAGAATGAAAGGAAACTGAAAGAGGCTAAGGAAAGAACAGGGAATGAGAGAAAACTCAAGAAGGCTCGCGAAAATGAAAAAAGTGAAAAGAGACTAAAAGAGGCTTTGGAGCAGGAAGAAACTGAGAAAAAACTAAAAGCTGAAAATGAAAAAAGACTAGAGGCTCTTAAATGGCAAGAAAATGAGAAGAAAAAGAAAGAGGCTCGTGAAAGAGAAGAAAATGAGAGGAGATTGAAAGTGGCTCTTGACTGGGAAGAGAATGAGAAGAAGCAGAAAGAGGCTTGTGAAAGAGAAGAAAATGAGAAGAGACTAAAACAGGCTATTGAGCAGGAGGAAAATGAGAAGAGATTAAAAGAGGCTCTCAAACAGGAACAAATTCTGAAGAAACAGAAGGAGGCTTGTGAAAGAGAAGAAAATGATAAGAGGTTAAAAGAAGCACTTGAGCATGAGGAAAATGAGAAGAAACAAAAAGCTCATGAGAAGAGACTGAAAGAAGCTTGTGAAAGAGAAGAGATTGAGAAGAAGCTAAAAGATGCTCGTGAAAGAGAAGAGATCGAGAAAAGGCGAAAGGATGTTCATAGACAAGCTGAAGATAAGAGAAGATTGAACAAGACCCATGAAAGAAAGGAGAGTGAGAAGAGATTAGAAGAGATGCCAGAGTGGGAAGAAACTGACAAAAGATTAAAAGAGGCCACAAAGTTGGAAGAAAGCGAGAAGAGGCCTGGAGATTCTGGTGATGTGGAAGAACTGAAGGGGCTAAAGAAAGCTCATGATCAAATTGTCAATGAAAATGAAAAGAAACTAAAATCTTGTCAAGGAACTTATGCACAAATGGAGGAGAATAATTTCAAGGCAACTGATGAGGCATGTAAGCTGCATGAGAACAAAAACATTCAGGCTGCTCAAGTAGCCCCCAAATATGAAGTGAACAGTTTGGAAGCAAATCAAGAGGCCCTTGGACAGGAGGAGAAATTAAAGATTGCTGCTGAATCACAAGGTATTCATAAGGATTTCAAAGCAGTTGAAATGGAAAATATACTGGTTGAAGAAATATTTGAAGCATCAGGCATGGCTGATGGTGATGCAGAGCAAGAAAAGAATAAGATCAGAATGGACAATTCCACAGGGTCAGTTCTTTTGGATGAGAATGTGAAAAAATCGCTTGAAGCTGGCATTGGCATTGGCATTGGACAAGCACACTTGGAGAAAAATTTGAGAGCTGCCCAGATGGCCTCCAATCCTGAAGATCTGAAAAAGAATTTCACTTCTGAATGGGGAGAGGGAGAGAAGAGTATGAAGCAGACTTCGGTTTCCTTTGAGCCAGAGGATAGCAAGGATAAATTTAGACCAAGTCAAGTGTTGAAAGAGTGGGTTGAAAATGGAAAGAAAGTGGAAGCAGCTCAGACAGCTACATTGGAAGGGAAAGGGAACATCCAGAAAACAGCTCAGCAGGTTAGCAATGGGCAAAGCACAGAAAAAAAGGAAAAGAATATTAACGAGACTCCAACACTAGAAGAGAGAGAAAGGGAAGAACGGATGAAGAGAGAAAGAGAGCTGGAAAAGGACCGGCTTAGAAAATTGGAAGAGGAAAGGGAGAGGGAAAGAGAAAGAGAAAAGGATAGGATGGCTGTTGACAGAGCAACCCGTGAAGCTCGTGACAGGGCATATGTTGAAGCCCGTGAGAGGGCTGAAAGAGCTGCTGTTGAGAAAGCGACTGCTGAAGCACGACAAAGAGCACTAACAGAAGCCCGAGAAAGGTTAGAGAAGGCATGTGCGGAGGCTAGAGAGAAGACATTATCTGATAAGACTTCTATAGAAGCCAGGCTCAGGGCAGAGCGTGCTGCAGTAGAGAGAGCAACAGCAGAGGCTCGAGAGCGTGCTTTTGAAAAAGCAATGGCTGAGAAAGCTGTCTCTGATGCAAGAGAACGAATGGAAAGATCTGTTTCCGATAAATTTTCTGCTTCTTCAAGAAATAGTGGATTGCGACAGAGCTCTTCATCCTCTGATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGCTTCCTATAACACTGAAAAATCTGAAGGAGTTGAAGGCGAATCAGCCCAAAGATGCAAAGCTAGATTAGAGAGATATCGGAGGACAGCTGACCGCGCGGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAATAGGTTAGCAGAAACTTTGGATGCTGATGTCAAGAGATGGTCAAGTGGAAAAGAAGGGAACCTGCGTGCATTGCTTTCAACATTGCAATATATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGA 4368 42.56 MEKFSHSRNQTSSALSKKICNGNGFSDRSAYDDVFGGPPKFGVPTISPRVEDYTEIFGSFHASRASSIPVLDLPAVDEADVFFDVQEVDYSDIFGGFRGLDFAVSYDELLGQSKDGDDSSEEAWTPAETGSLSEESDYSGKNESMSYGDAHQSFDDGKDFNISFHKANQRSKGDMSNGAHVTQLDAVPGYTVVVDGTPLQKTNYENPPLWVTGDISLSRSFGGGKIEEKHLWKTMSYPQNSNDGMHTFEIEPQVGYGENGSHSSETFITVSEISLRTQPSPVPPPLRPPPIVDVKKGDSSRSASQLKANKNYAFEGTAGGSSPGSSPPFFDVEVDASSSAAASAAAMKEAMEKAQAKLKNAKEIMERRKEGLQSRTKLGSRNDTKHKEGKLSSISNSLKDEKVQGSCETPKDFVREASQKEMKTTQVLSDSREGEAFLNVAKKSAEGRHGKESWSSQESYKTEGTGKWKEATEFYELVRGDKFRKEQANNEKVLVKNKKVIESRQKEKRAAIESFEQQEESDKKTNAAQEAHGWEENEAKEACRHEEHEKVEVAHVLCGWKENEKTWRVGMEHEEAEHKLNVADEWEEHDILIEIQQKQNEVEVKEAMKQENERKLKEAKERTGNERKLKKARENEKSEKRLKEALEQEETEKKLKAENEKRLEALKWQENEKKKKEAREREENERRLKVALDWEENEKKQKEACEREENEKRLKQAIEQEENEKRLKEALKQEQILKKQKEACEREENDKRLKEALEHEENEKKQKAHEKRLKEACEREEIEKKLKDAREREEIEKRRKDVHRQAEDKRRLNKTHERKESEKRLEEMPEWEETDKRLKEATKLEESEKRPGDSGDVEELKGLKKAHDQIVNENEKKLKSCQGTYAQMEENNFKATDEACKLHENKNIQAAQVAPKYEVNSLEANQEALGQEEKLKIAAESQGIHKDFKAVEMENILVEEIFEASGMADGDAEQEKNKIRMDNSTGSVLLDENVKKSLEAGIGIGIGQAHLEKNLRAAQMASNPEDLKKNFTSEWGEGEKSMKQTSVSFEPEDSKDKFRPSQVLKEWVENGKKVEAAQTATLEGKGNIQKTAQQVSNGQSTEKKEKNINETPTLEEREREERMKRERELEKDRLRKLEEEREREREREKDRMAVDRATREARDRAYVEARERAERAAVEKATAEARQRALTEARERLEKACAEAREKTLSDKTSIEARLRAERAAVERATAEARERAFEKAMAEKAVSDARERMERSVSDKFSASSRNSGLRQSSSSSDLQSQSTGSSSGSRYPYSSVYGASYNTEKSEGVEGESAQRCKARLERYRRTADRAAKALAEKNKRDLLAQREQAERNRLAETLDADVKRWSSGKEGNLRALLSTLQYILGPDSGWQPIPLTDVITAVAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER* 1456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18579202 18592042 + Vvi4g999 Vvi4g999 785778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g999 1455 MobiDBLite consensus disorder prediction 404 419 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1078 1166 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1246 1294 - -
Vvi4g999 1455 Coils Coil 595 622 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 362 465 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 362 395 - -
Vvi4g999 1455 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 8 1450 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1246 1260 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 436 456 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1020 1062 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 113 150 - -
Vvi4g999 1455 Coils Coil 1212 1236 - -
Vvi4g999 1455 ProSiteProfiles dnaJ domain profile. 1391 1455 IPR001623 -
Vvi4g999 1455 PANTHER AUXILIN, ISOFORM A 8 1450 - -
Vvi4g999 1455 Coils Coil 691 812 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 606 689 - -
Vvi4g999 1455 Gene3D DnaJ domain 1329 1455 IPR036869 -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1103 1166 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 7 22 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 124 149 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 503 534 - -
Vvi4g999 1455 Coils Coil 1117 1151 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 740 864 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1261 1294 - -
Vvi4g999 1455 Coils Coil 1316 1355 - -
Vvi4g999 1455 Coils Coil 344 375 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 275 304 - -
Vvi4g999 1455 SUPERFAMILY Chaperone J-domain 1306 1454 IPR036869 -
Vvi4g999 1455 Coils Coil 871 891 - -
Vvi4g999 1455 MobiDBLite consensus disorder prediction 1082 1102 - -
Vvi4g999 1455 Coils Coil 1166 1207 - -
Vvi4g999 1455 Coils Coil 628 686 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g999 - - - vvi:100244517 2562.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g999 Vvi18g969 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41