Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1 ATGGAGCTCCCTCAAATCCCCCAGCTGCTCAACGAAACTCTCAGCCCCGATGGAAGCGTTGTTCGTGCAGCCACGGAGTCTCTCGATCGTCTCTCTCTTCATCCAGATTTCCCTTTCTATCTACTCTCTATCACCACTGGAGGACAAAACCCTGGTCAAAGAGTGGCTGCTGCCACATATCTCAAGAACTTCACTAGGCGAAATGTGGATGGGAGCAGTCCATTTTCAAAAATTAGTAAGGAATTCAAGAACCAGCTCATGCGTGCCTTGCTTCAAGTGGAACCAGCAGTCCTAAAAATTTTTGTTGAAGCGTTCTGGGTCATTGTTGCTTCTGTGTTTGTTAAGGAGAATTCATGGCCTGAACTCGTGCCTGAACTGGCTTCTGTCATTCAAAATAGTAGTCTTATTAGTGGTGCTGCAAATTGTGAATGGAACACAATCAATGCTCTGACAGTTCTTCATTCACTTATTAGACCCTTTCAGTTTTTCTTATTGTTTCTCATATTGCTTCCCCTTTTGGTAATTATGTATAATTTCCCTTTTTGCCTTTCTTTTTCTCTCTGTTATTTCTTAAATCCAAAAGTTCCAAAGGAGCCTGTTCCACCACAACTAGAGCTAATCACAAAAGAAATTCTTGTGCCTTTACTGGCTGTATTTCATCATTTTGTTGAAAAGGCTTTAACTGTCCATGGGAGAACAGAAGCAGAAACTGAGAGGACCCTTCTCATTGTATGCAAGTGTACATATTTGGCTGTGAGGTCTCATATGCCATCTGCTTTGGCTCCTCTTCTTCCTTCTTTCTGTTGCGATCTACTCAGGATTCTGGGTTCTTTGAGTTTTGATCATATGGACCCGCTGGGAGAAGGGTACTTGCTGAGGCTGAAAACTGGGAAGAGGAGTTTGCTCATTTTTTGTGCTCTGGTCACTCGGCATCGGAAGTTTTCGGATAAGTTGATGCCGGACATCATAAATTGTGTTTTAAAGATTGCTGCACATAGCATAAAAATCAGTAAGCTTGATTTCCTATCAGAGAGGGTTGTTTCATTAGCTTTTAATGTCATTTCACATGTTCTGGAGACCGGCCCAGGATGGAGGCTAGTTTCCCCCAATTTTTCCTCGTTGTTGGAGTCTGCAATTTTTCCGGCATTAGTGATGAATGAAAAGGATATTTCAGAGTGGGAAGAAGACAAAGACGAGTACATACAGAAGAATCTTCCATCCGATCTTGAAGAGATTTCTGGGTGGAGAGAGGACTTGTTCACAGCCAGAAAGAGTGCAATAAATTTACTTGGTGTTATTTCAATGTCAAAGGGACCTCCAGTGGCGGCAAGTAACTGTTCTTCAGCTTTATCTAAGCGTAAAAAAGGCGAAAAGAACAGGGGAAAAGATCAACGCTGCTTTATGGGGGAGTTGCTTGTGATTCCATTTCTGTCAAAGTTTCCCATTCCCTCAGAGGCTAATGTATCTGAAACAAAGATTATAAATGATTATTATGGTGTTTTAATGGCATATGGAGGTCTTCAAGATTTTCTAAGGGAGCAGAAACCTGGATATATCTCAACTCTAATTCGTAATCGGGTGCTACCACTGTATAGAGTATCAGTTTCCCTACCTTACTTGGTTGCCACTGCAAATTGGGTTCTTGGAGAGCTTGCATCTTGTCTCCCTGAAGAGATGAGTGCAGATGTATATTCTTCGCTTCTGAAGGCATTGGCCATGCCAGATATGGGGGACGTTTCTTGTTATCCTGTGCGAGTTTCTGCTGCTGGTGCAATTGCTGGACTACTTGAGGTATACGACCCCCTTTCTTCTACCCCATACTTCCTACTAATAACTCAATACCAAAGAACCTCATTTTCTACCATAAAGCGCCAACTCCATTTACCCAAAAGAGCTCTATTAAAAGTAGAGACACTTTTTACCCCCAAACCCCCTTTACTTTTTATCCGAGCAAACAACCGGCCATTTAACAAGATGAATCTT 1983 42.21 MELPQIPQLLNETLSPDGSVVRAATESLDRLSLHPDFPFYLLSITTGGQNPGQRVAAATYLKNFTRRNVDGSSPFSKISKEFKNQLMRALLQVEPAVLKIFVEAFWVIVASVFVKENSWPELVPELASVIQNSSLISGAANCEWNTINALTVLHSLIRPFQFFLLFLILLPLLVIMYNFPFCLSFSLCYFLNPKVPKEPVPPQLELITKEILVPLLAVFHHFVEKALTVHGRTEAETERTLLIVCKCTYLAVRSHMPSALAPLLPSFCCDLLRILGSLSFDHMDPLGEGYLLRLKTGKRSLLIFCALVTRHRKFSDKLMPDIINCVLKIAAHSIKISKLDFLSERVVSLAFNVISHVLETGPGWRLVSPNFSSLLESAIFPALVMNEKDISEWEEDKDEYIQKNLPSDLEEISGWREDLFTARKSAINLLGVISMSKGPPVAASNCSSALSKRKKGEKNRGKDQRCFMGELLVIPFLSKFPIPSEANVSETKIINDYYGVLMAYGGLQDFLREQKPGYISTLIRNRVLPLYRVSVSLPYLVATANWVLGELASCLPEEMSADVYSSLLKALAMPDMGDVSCYPVRVSAAGAIAGLLEVYDPLSSTPYFLLITQYQRTSFSTIKRQLHLPKRALLKVETLFTPKPPLLFIRANNRPFNKMNL 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 0 12798 - Vvi5g1 Vvi5g1 786143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1 661 PANTHER IMPORTIN-7, 8, 11 189 597 - -
Vvi5g1 661 PANTHER IMPORTIN-7, 8, 11 3 164 - -
Vvi5g1 661 Gene3D - 1 617 IPR011989 -
Vvi5g1 661 Pfam Importin-beta N-terminal domain 24 90 IPR001494 GO:0006886|GO:0031267
Vvi5g1 661 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 164 - -
Vvi5g1 661 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 189 597 - -
Vvi5g1 661 ProSiteProfiles Importin-beta N-terminal domain profile. 24 96 IPR001494 GO:0006886|GO:0031267
Vvi5g1 661 SUPERFAMILY ARM repeat 1 605 IPR016024 -
Vvi5g1 661 SMART IBN_N_2 24 92 IPR001494 GO:0006886|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1 - - - vvi:100853206 1111.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . Sed09g0632 . . . Cma17g00394 . Car17g00365 Cpe12g00345 . Bhi12g01983 Tan06g2808 Cmetu11g2556 . . . Lcy12g0895 . . . . . . . Lsi09g01519 . . Cme11g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010694 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 5 32