Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1004 ATGGATCAGCTGGGTGCTTCCAATCACGGCGCAGAATTGCAGGATTGCAGAATTTCAAATCAGGCTGCAAATGCAGATGGCAGACAAACTGTCATCACAGGCATGGATGCCGGTCTGTACAAGGCGGCAGCGGAGGGGAAGATCGATGACCTCAAGAAGATTTCAGAGCATGAATTTCAAGTCCAGTTAACCCCAAACCATAACACAATACTCCACATCGCAGCCCAGTTCGCAAGGGAAGGGCATTTGAAGGTCGTGGAAGCTCTTATACGCACTGCAAAATCACTTCCCGTAGATATTGAAACCGGGATTGGAGCAGAAAAGGTGATTTTGAGAACCAAAAATAAGAGGAAAGACACAGCCTTACATGAGGCAGTGCGATATGGGCATTCTGATGTGGTGAAGTTATTGATTGAGAAAGACCCGGAGTTTACCTATGGTCCTAATAGTTCTGGCAGGACTCCTCTTTACATAGCTGCTGAGAGAAGATTTGTAGACATGGTGGGTATGATCATAAGCACTTGCCATTCACCAGCTTACGGTGGTTTCAACGGTAGAACGGCCTTGCATGCTGCTGTAATCTGCAATGACAAAGAAATCACAGAGAAGATACTGGAATGGAAACCCGCTCTGACCAAAGAAGTAGATGACAATGGGTGGTCTCCGCTCCACTTTGCTGCAGAGAGTGGAGATGATCCAACAATAGTGAGGCGATTACTAGAGAAATCAGATAAGAGTGTAGTCTACCTTGGGACCAAAGATGGGAAAAAGACTGCCCTTCATATTGCATCACTCCACCATCATGGGAAAATAGTAGAGGAGCTCCTATCTCAATTCCCGGATTGTAGCGAGCAGGTTGATGACAAGGGCCATAATATTTGTCACTTTGCCATGATGGAAAAAGGGGAAAACAGTACTTACCTTTTAAATCACTGGCTGAGATTGAGAGGGCTTGTAAATGAAGAAGATGCTCAAGGAAACACACCCCTCCACCTTCTCTCTTCTAACAAAATTCTGAATCCAGTGTTCGTATTAGATCGTAAAGTCGATAAGAAGGCCTGCAATAATGAATACTTGACAGCTGTTGACATAATTTCGAGGGCCCAGGACATTTCCGCAGGAGAAAAGGTAAAGCTCCCGTATCACTTCATCTATAATATTTATTTGAAAAATGCTTGTTTTACCTCCAGACTGCATAAGATAAGGCAAATAAATAAAGTCACACAAAGCAAAGCCTTCAAAGAGAAATACATCTCTGAACTAAAGCGTAGAGGCGAAGCCCATTTGATGGTTTCCGCACTTATAACAACGGTAACTTTTGCGGCGGGTTTCACCTTGCCCGGTGGTTACAATGGGGATGATGGCATGGCAATTTTAACAAGGAAACCAGCTTTCAGGGCATTTGTTGTGACCGATACCATTGCCCTGGTGCTCTCAGTATCTGCTGTCTTCCTTCATTTTTTTATGACTGTGCATGACGATGAAACTGTCCTTCGAAAACACTTCCTTTGGGCCGTTTCTTTCACCATGCTTGGCATGGGAGCAATGGTGATCGCTTTCACGACTGGGTTGTATATGGACGGCCGTGGAGCAAGTCCAATCTTGGCCTTGAGTGAGTCAAACTGA 1626 44.83 MDQLGASNHGAELQDCRISNQAANADGRQTVITGMDAGLYKAAAEGKIDDLKKISEHEFQVQLTPNHNTILHIAAQFAREGHLKVVEALIRTAKSLPVDIETGIGAEKVILRTKNKRKDTALHEAVRYGHSDVVKLLIEKDPEFTYGPNSSGRTPLYIAAERRFVDMVGMIISTCHSPAYGGFNGRTALHAAVICNDKEITEKILEWKPALTKEVDDNGWSPLHFAAESGDDPTIVRRLLEKSDKSVVYLGTKDGKKTALHIASLHHHGKIVEELLSQFPDCSEQVDDKGHNICHFAMMEKGENSTYLLNHWLRLRGLVNEEDAQGNTPLHLLSSNKILNPVFVLDRKVDKKACNNEYLTAVDIISRAQDISAGEKVKLPYHFIYNIYLKNACFTSRLHKIRQINKVTQSKAFKEKYISELKRRGEAHLMVSALITTVTFAAGFTLPGGYNGDDGMAILTRKPAFRAFVVTDTIALVLSVSAVFLHFFMTVHDDETVLRKHFLWAVSFTMLGMGAMVIAFTTGLYMDGRGASPILALSESN* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17485622 17488917 - Vvi5g1004 Vvi5g1004 787146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1004 541 Gene3D - 179 376 IPR036770 -
Vvi5g1004 541 SMART ANK_2a 289 321 IPR002110 GO:0005515
Vvi5g1004 541 SMART ANK_2a 255 284 IPR002110 GO:0005515
Vvi5g1004 541 SMART ANK_2a 66 98 IPR002110 GO:0005515
Vvi5g1004 541 SMART ANK_2a 151 180 IPR002110 GO:0005515
Vvi5g1004 541 SMART ANK_2a 184 213 IPR002110 GO:0005515
Vvi5g1004 541 SMART ANK_2a 117 146 IPR002110 GO:0005515
Vvi5g1004 541 SMART ANK_2a 218 249 IPR002110 GO:0005515
Vvi5g1004 541 Pfam Ankyrin repeats (3 copies) 213 278 IPR002110 GO:0005515
Vvi5g1004 541 Pfam Ankyrin repeats (3 copies) 40 142 IPR002110 GO:0005515
Vvi5g1004 541 ProSiteProfiles Ankyrin repeat region circular profile. 218 243 - -
Vvi5g1004 541 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Vvi5g1004 541 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 67 526 - -
Vvi5g1004 541 Gene3D - 34 177 IPR036770 -
Vvi5g1004 541 ProSiteProfiles Ankyrin repeat region circular profile. 117 140 - -
Vvi5g1004 541 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 67 526 - -
Vvi5g1004 541 ProSiteProfiles Ankyrin repeat profile. 218 243 IPR002110 GO:0005515
Vvi5g1004 541 SUPERFAMILY Ankyrin repeat 39 365 IPR036770 -
Vvi5g1004 541 Pfam Domain of unknown function 420 526 IPR026961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1004 - - - vvi:100250447 662.144
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84