Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g1005 | ATGGCTGTGGAGGGAGGATTTACAGCCGCGGTGAAACTAATCATTGAGAAAAGTAGTACTTCGCCTTCTTACAATGGCTTAATGGGTAGAACTGCCTTGCACGCTGCTGTAATATGCAATGACATAGAAATGACAAAGACAATACTGGAATGGAAGCCAGATCTCACCAAAGAAGTAGATAAGAATGGATGGTCTCCACTTCACTATGCTGCAGAGAGAGGTTGTGATCCAGAAATAGTGAGGCTATTGCTAGAAAAATCAGAAAAGAGTGTAGCCTACCTTAGGAGCAAAGATGGGAAGAAGACTGCCCTTCATATTGCATCTTTCCACCATCATACAAAAATAGTAGAGAAGATCCTATCTCACTCTCCTGGTTGTCGGGAGCAGGTTGATGATAAGGGCAATAATATTTTTCACTTTGCCATGATGAAAGAGGGAGACGATGATTTTAACCCTAGTAGTTACTTCTTCAATTATTGGTTAAGGTCGAGAGGACTTGTAAATGAGAAAAATGCTCAAGGAAACACACCCATCCACCTGCTCTCTCTTAATCAAATTTTAGATTTTCGGTTTGTATGGAATTATAAAGTGGATAAGAAGGCGTACAACAATGAAGACTTGACAGCTTATGACATAATTTTGAGGGACAAAGAGGACATTTCCGAGGAAAAGGATCGCATCCAATCTTGGTTGGAGGCTGTTACGACTGGACGTATTTCTTCGTTTTGGGAGAAGGAAACTAAGAGACAGGAGATAGAGCAAGAAAGGAAAGAATACATCTCTCAATTACAAAAACAAGGGGAAACCCATTTGATAGTTTCTGCGCTTATAACAACAGTAACTTTTGCTGCGGGTTTCACCTTGCCCGGTGGTTACAAAGAGGATGATGGCCAGGCAATTTTATCAAAGAAAGCAGCCTTTAGAGCATTTGTTGTGACGGATACCATAGCCATGGTATCTTCACTATGCGCCGTATTTCTTCACTTTTTGATGACCCTGCACAAACGTGGGAAGTTCCTTGAAAAACATTTACTTTGGGCCTTTAGTTTGACCATGGTTGGGATGGGAGCAATGGCCATCGCTTTCGCAACCGGCTTGTACGCTGTTTTACCGCATTCCTCGGGCCTTTCAGTTCTCACTTGCATCCTCTGCTCTTGCTTTTTCCTCTCCATTGCAGTTGAATATTGTAAATTTTGGAGAGGTACGATTTCGGAATGGATAGATGTACGAAAGAATGATGCCAAGGCATTGTTTTTTATTCAACAAGCAATCACAGACAGCATTTTTCCTCAAATTTCAAAGGCAACGAAGTCTAAGGAAGCATGGGACACTTTGCAAACAAAATATCAAAGCACAAGCCTGGTTGCAGCTCAAGATGGAGATGGCAGCCAAACTGACATCCCAGTCATGGATGACTCTGTGTATAAGGCAGCAGCGAAGGGCGACATTGAAGTTCTGAAGAAAATTCCAGAGTCCCAATTTCATGCCCAATTAACCCCAAAGCATAACACGATACTCCACATCGCAAGTGAATTCGGTCAAACAGAGTGTGTGAAATGGATCCTTACGTTGCCTGCATGTTCATCTCTACTGCAATGCCCTAATCTGAACGGGGACACTGTGCTTCACCTTGCAGCAAGGGAAGGGCATTTGAAGGTCGTGGAAGCTCTTCTAGAACCTACCCTAGATATTGAAACTGGAGTTGGAGAAGATAAGGAGATGTTGATCGGGATGACAAATAAGGGGAAAAACACAGCCTTGCATGAGGCAGTGCGATTTAACCATTCTGATGTGGTGGAGTCATTGATTGAGAAGGACCCCAGGTTTAACTATCGTGCTAATGATTCAGGTACGACTCCTCTTTACATGGCTGCGGAGAGAGGACTTACAGGCTTGGTGGTACTAATCATAGACAAAAGTAGTACTTCACCCTCTTACCATGGCTTAATGGGTAGAACGGCCTTGCACGCTGCTGTATTATGCAATAATGAAGCAATGACAAATAAGATACTTGAATGGAAGCCAGACCTCACCAAAGAAGTAGATAAGAATGGGTGGTCTCCACTTCACTATGCTGCAGAGAGAGGTTGTGATCTGAAAATAGTGGAGCTATTGCTAAGTAAGTCAGAAAAGAGTGTAGCCTACCTTAGGAGCAAAGATGGGAAGAAGACTGCCCTTCATATTGCATCTTTCCACCATCATACAAAAATAGTAGAGGAGATCCTATCTCACTCTCCTGGTTGTCGGGAGCAGAAAAATGCTCAAGGAAACACACCCATCCATCTGCTCTCTCTTAATCAAATTTCAGATTCTTGGTTTGTATGGAATGAAAAAGTGGATAAGAAGGCGTACAACAATGAAGACTTGACAGGTTATGACATAATTTTGAGGGCGGACATTTCCGAGAAAAAGGAAAATATCCAAGTTGCCTTCGAGTATGTTATGACTGAAAGTCGTTCTTCGGTTACGGAGAAGGAAACTAAGAGACGGGAGAGAAAGAAAGAAAGGAAAGAATACATCTCTCAATTACAAAAACAAGGGGAAACCCATTTGATAGTTTCTGCGCTTATAACAACAGTAACTTTTGCTGCGGGTTTCACCTTGCCCGGTGGTTACAAAGAGGATGATGGCCAGGCAATTTTATCAAAGAAAGCAGCCTTCAGAGCATTTGTTGTGACGGATACCATAGCCATGGTATCTTCACTATGCGCCGTATTGCTTCACTTTTTTATGACCATGCGCCAACGTGGGGAGTACCTTGAAAAACACTTACTTTGGGCCTTTAGTTTGACCATGGTTGGGATGGGAGCAATGGCCATCGCTTTCGCAACCGGCTCGTACGCTGTTTTACCGCATTCCTCGGGCCTTTCATTTCTCACTTGCATCATCTGCTCTTGCTTTTTCCTCTCCATTGCAGTTGAATATTGTTTATTTTGGAGAGGTACGATTTCGGAATTCACAATCAAAATAATCCACAAAATCCTCCTTGCTTCTGAAAGAAAAGAAAATGCAGATGCGTAG | 3021 | 42.7 | MAVEGGFTAAVKLIIEKSSTSPSYNGLMGRTALHAAVICNDIEMTKTILEWKPDLTKEVDKNGWSPLHYAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALHIASFHHHTKIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGDDDFNPSSYFFNYWLRSRGLVNEKNAQGNTPIHLLSLNQILDFRFVWNYKVDKKAYNNEDLTAYDIILRDKEDISEEKDRIQSWLEAVTTGRISSFWEKETKRQEIEQERKEYISQLQKQGETHLIVSALITTVTFAAGFTLPGGYKEDDGQAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFLMTLHKRGKFLEKHLLWAFSLTMVGMGAMAIAFATGLYAVLPHSSGLSVLTCILCSCFFLSIAVEYCKFWRGTISEWIDVRKNDAKALFFIQQAITDSIFPQISKATKSKEAWDTLQTKYQSTSLVAAQDGDGSQTDIPVMDDSVYKAAAKGDIEVLKKIPESQFHAQLTPKHNTILHIASEFGQTECVKWILTLPACSSLLQCPNLNGDTVLHLAAREGHLKVVEALLEPTLDIETGVGEDKEMLIGMTNKGKNTALHEAVRFNHSDVVESLIEKDPRFNYRANDSGTTPLYMAAERGLTGLVVLIIDKSSTSPSYHGLMGRTALHAAVLCNNEAMTNKILEWKPDLTKEVDKNGWSPLHYAAERGCDLKIVELLLSKSEKSVAYLRSKDGKKTALHIASFHHHTKIVEEILSHSPGCREQKNAQGNTPIHLLSLNQISDSWFVWNEKVDKKAYNNEDLTGYDIILRADISEKKENIQVAFEYVMTESRSSVTEKETKRRERKKERKEYISQLQKQGETHLIVSALITTVTFAAGFTLPGGYKEDDGQAILSKKAAFRAFVVTDTIAMVSSLCAVLLHFFMTMRQRGEYLEKHLLWAFSLTMVGMGAMAIAFATGSYAVLPHSSGLSFLTCIICSCFFLSIAVEYCLFWRGTISEFTIKIIHKILLASERKENADA* | 1007 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 17537905 | 17558726 | + | Vvi5g1005 | Vvi5g1005 | 787147 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1005 | 1006 | Pfam | gag-polypeptide of LTR copia-type | 410 | 454 | - | - | |
| Vvi5g1005 | 1006 | Pfam | Ankyrin repeats (3 copies) | 2 | 86 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | Pfam | Ankyrin repeats (3 copies) | 679 | 747 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | Pfam | Ankyrin repeats (3 copies) | 534 | 610 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat region circular profile. | 684 | 709 | - | - | |
| Vvi5g1005 | 1006 | Gene3D | - | 612 | 855 | IPR036770 | - | |
| Vvi5g1005 | 1006 | SUPERFAMILY | Ankyrin repeat | 722 | 856 | IPR036770 | - | |
| Vvi5g1005 | 1006 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 572 | 762 | - | - | |
| Vvi5g1005 | 1006 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 1 | 408 | - | - | |
| Vvi5g1005 | 1006 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 751 | 977 | - | - | |
| Vvi5g1005 | 1006 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 501 | 559 | - | - | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat profile. | 684 | 709 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | Gene3D | - | 469 | 605 | IPR036770 | - | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat profile. | 537 | 565 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat profile. | 582 | 614 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | PANTHER | ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE | 751 | 977 | - | - | |
| Vvi5g1005 | 1006 | PANTHER | ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE | 501 | 559 | - | - | |
| Vvi5g1005 | 1006 | PANTHER | ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE | 1 | 408 | - | - | |
| Vvi5g1005 | 1006 | PANTHER | ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE | 572 | 762 | - | - | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat region circular profile. | 537 | 565 | - | - | |
| Vvi5g1005 | 1006 | Gene3D | - | 1 | 273 | IPR036770 | - | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat region circular profile. | 62 | 87 | - | - | |
| Vvi5g1005 | 1006 | ProSiteProfiles | Ankyrin repeat profile. | 62 | 87 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | Coils | Coil | 249 | 269 | - | - | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 616 | 646 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 28 | 57 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 650 | 679 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 721 | 750 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 501 | 532 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 62 | 93 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 582 | 611 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 99 | 128 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 684 | 715 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SMART | ANK_2a | 537 | 566 | IPR002110 | GO:0005515 | |
| Vvi5g1005 | 1006 | SUPERFAMILY | Ankyrin repeat | 2 | 213 | IPR036770 | - | |
| Vvi5g1005 | 1006 | Pfam | Domain of unknown function | 262 | 369 | IPR026961 | - | |
| Vvi5g1005 | 1006 | Pfam | Domain of unknown function | 842 | 949 | IPR026961 | - | |
| Vvi5g1005 | 1006 | SUPERFAMILY | Ankyrin repeat | 475 | 766 | IPR036770 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g1005 | - | - | - | vvi:109121511 | 1113.6 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1005 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000685 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 3 | 1 | 1 | 0 | 4 | 5 | 0 | 1 | 0 | 0 | 1 | 1 | 6 | 3 | 13 | 7 | 2 | 5 | 7 | 3 | 17 | 84 |