Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1009 ATGAGTTCCTGGAATGACTCACTGCATTTCTGTCAGTGGCAGGGGGTTACATGCAGTCGCCGACGTCAGAGGGTCACAGCCTTGAGGTTGGAGGGTCAGAGCTTAGCTGGTTCCTTACCTCCTATTGGGAACTTAACATTCCTGAGAGAGTTGGTGTTGTCCAACAATAACTTGCAGGGTTCTATCCCCACTGACATTGGTCTTTTGCGACGAATGCAGCATCTCAATCTCAGCACAAATTCTCTCCAAGGTGAGATTCCCATTGAGCTGACCAACTGTTCAAACCTCAAGACTGTGGACTTAACAAGGAACAATCTGACCGGGCAGATTCCCTTGCACGTTGGCCATATGTTGAAACTCCTACTTCTATGGCTTGGTGCCAACGATCTAACAGGGGTTAGCTTGAAATATTTATATTTGGATGTAAATAACCTATCTGGTATGATTCTTCCCTCACTCTATAATTGGTCATCTCCCATTGAATTTTTTGTATCTGGCAACATTCTAACTGGAAATTTTACTCCAAACATGAGGTTTAATTTTCCTCAACTCCGCAAGTTTGGCATAGCAGGGAATCAGTTTACCGGAGTAATTCCAGATACACTATCCAATATTTCAGGACTTGAACATTTGGATCTAGGTAACAATTATCTAACTGGCCAAGTCCCTGATAGCTTAGGAAAGCTTATCATAGGAGACAACAAAATATCTGGAAGCATCCCAAAAGAGATTGGAAACCTGATCAGCTTAACTGTTTTCAGTGCAATGCGGAATAATCTCACTGGTGCCATTCCCACTTCAATTGGCAAGCTTCAGAATTTAAGAGTATTCGAGTTAAATTGGAACAGGCTATCAGGTCTGCTCCCATCCACCCTCTGCAACTCAAGTCAACTATACTACCTTGACATGGGCTACAACAATTTGGAAGGGAACATTCCTACATCTCTCAGGAACTGCCAAAATATGGAAATTCTTTTCCTCGATCACAATAAGTTGAATGGTAGTGTACCTGAAAATGTCATTGACCATTTCAATCAGTTGAGATCACTCTACCTACAGCAAAACACACTCACCGGTTCTCTTCCAGCAGATTTTGGTCAACTGAAAAATCTAAATCAGTTACTTGTTTCTGACAACAACTTGTCAGGGGAAATCCCCAGGGAACTTGGCAGCTGTTCGGTATTAGAGTATCTTGACATGGCAAGAAACTCCTTCCAGGGAAACATCCCCCTGTCCTTTAGCTCTTTGGGAGGAATTCAAATCCTAGATCTTTCGTGCAACAACTTGTCTGGAATGATTCCCAAAGAACTACAACATCTTTCCGCTTTGCTGAGTTTAAATCTGTCTTATAGCTACATTGAAGGTGAGGTTCCAAGTGGAGGAGTTTTTAAAAATGTGAGTGGGATTTCAATCACTGGGAACAAGAAGCTTTGTGGGGGAATCCCTCAACTTCAGCTGCCAGCTTGTTCTGATGTAGAGTCAGCAAAGCATGGCAAGGGGAAGCATCTTTCAACCAAAATTGCAGTAATGAAGTCTTCTTCCACTTTTTTAAGATATGGGTACTTGAGGGTTTCTTACAAAGAGCTCCTCAAGGCAACTAGTGGATTTGCTTATTCCATCTTGATTGGCATGGGAAGTTTTGGTTCCGTGTACAAAGGAATTCTAAGTCGAGGCGAAAGACCTGTTGCAGTGAAGGTACTGAACCTTCAACAGCGTGGAGCTGCCAAGAGTTTCATGGCTGAGTGCAAGGTCCTCAGGAATATTCAGCAACGGAATCTGCTTCGAATCATAACTTCATGTTCAAGTGTGGACAACAAAGGTTGTGATTTTAAGGCTCTAGTATTTGAGTTCATGCCTAATGGAAACCTAGATAGCTGGCTGCATCATGAATCCAGAAATTTAAGCTTCAGACAAAGATTGGATATCGCAATTGATATTTCAAGTAGTGATCAAACCAGTTCAGCCCTGCTGATGGCATCCATCGGTTATGTGGCTCCAGGTACTCTTCTTTATGTGTTTTGCACATTCCTAAAAATAACTTGTGAAGTTATTGTAAAAAAGAAAAATATATGCATGGCAGAATACGGAATAGGTGGCTCCATGTGGCCTCAAGGAGATATGTACAGCTATGGCATCCTTTTCCTGCAGATGTTGACGGGAAGGAGACCAATAGAGCACATGTTTTCGGATGGTTTGAGCCTTCACAGTTTCTCGAAGATGGCATTGCCAGAACGGGTGATGGAGATTGCCGATTCAACCTTGGTTGGGGAGTCAGGTGAAGCGATCAACAATATAGCAAATCACGGTGATATGGAAGGTAGAATGCAGGATTGCCTTGCTTCAATTGCGAGAATTGGAGTAGCATGTTCTGAAGAATCACCTGGTGGTCGAATGGACATCAAAGACGTGGTGATGGAACTGAATATCATTAAGGAAGTGTTTCTTGGGGTAGGAATCCATGGAGAGAGACATATCAGGATGCAACTACCTCCGGAAGGAACATCTCAGCTCGGTGGTGACTGA 2523 42.93 MSSWNDSLHFCQWQGVTCSRRRQRVTALRLEGQSLAGSLPPIGNLTFLRELVLSNNNLQGSIPTDIGLLRRMQHLNLSTNSLQGEIPIELTNCSNLKTVDLTRNNLTGQIPLHVGHMLKLLLLWLGANDLTGVSLKYLYLDVNNLSGMILPSLYNWSSPIEFFVSGNILTGNFTPNMRFNFPQLRKFGIAGNQFTGVIPDTLSNISGLEHLDLGNNYLTGQVPDSLGKLIIGDNKISGSIPKEIGNLISLTVFSAMRNNLTGAIPTSIGKLQNLRVFELNWNRLSGLLPSTLCNSSQLYYLDMGYNNLEGNIPTSLRNCQNMEILFLDHNKLNGSVPENVIDHFNQLRSLYLQQNTLTGSLPADFGQLKNLNQLLVSDNNLSGEIPRELGSCSVLEYLDMARNSFQGNIPLSFSSLGGIQILDLSCNNLSGMIPKELQHLSALLSLNLSYSYIEGEVPSGGVFKNVSGISITGNKKLCGGIPQLQLPACSDVESAKHGKGKHLSTKIAVMKSSSTFLRYGYLRVSYKELLKATSGFAYSILIGMGSFGSVYKGILSRGERPVAVKVLNLQQRGAAKSFMAECKVLRNIQQRNLLRIITSCSSVDNKGCDFKALVFEFMPNGNLDSWLHHESRNLSFRQRLDIAIDISSSDQTSSALLMASIGYVAPGTLLYVFCTFLKITCEVIVKKKNICMAEYGIGGSMWPQGDMYSYGILFLQMLTGRRPIEHMFSDGLSLHSFSKMALPERVMEIADSTLVGESGEAINNIANHGDMEGRMQDCLASIARIGVACSEESPGGRMDIKDVVMELNIIKEVFLGVGIHGERHIRMQLPPEGTSQLGGD* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17616324 17619434 + Vvi5g1009 Vvi5g1009 787151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1009 840 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 694 819 - -
Vvi5g1009 840 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 228 648 - -
Vvi5g1009 840 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 96 225 - -
Vvi5g1009 840 SUPERFAMILY L domain-like 226 479 - -
Vvi5g1009 840 Gene3D Ribonuclease Inhibitor 134 229 IPR032675 -
Vvi5g1009 840 ProSitePatterns Protein kinases ATP-binding region signature. 542 565 IPR017441 GO:0005524
Vvi5g1009 840 SMART LRR_typ_2 45 69 IPR003591 -
Vvi5g1009 840 SMART LRR_typ_2 271 294 IPR003591 -
Vvi5g1009 840 SMART LRR_typ_2 368 392 IPR003591 -
Vvi5g1009 840 SMART LRR_typ_2 205 229 IPR003591 -
Vvi5g1009 840 SMART LRR_typ_2 344 367 IPR003591 -
Vvi5g1009 840 SMART LRR_typ_2 416 439 IPR003591 -
Vvi5g1009 840 SUPERFAMILY L domain-like 4 229 - -
Vvi5g1009 840 SUPERFAMILY Protein kinase-like (PK-like) 515 812 IPR011009 -
Vvi5g1009 840 Gene3D Transferase(Phosphotransferase) domain 1 649 814 - -
Vvi5g1009 840 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 694 819 - -
Vvi5g1009 840 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 228 648 - -
Vvi5g1009 840 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 96 225 - -
Vvi5g1009 840 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 1 132 - -
Vvi5g1009 840 Gene3D Ribonuclease Inhibitor 230 498 IPR032675 -
Vvi5g1009 840 ProSiteProfiles Protein kinase domain profile. 536 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1009 840 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515
Vvi5g1009 840 Pfam Leucine rich repeat 297 357 IPR001611 GO:0005515
Vvi5g1009 840 Pfam Leucine rich repeat 395 451 IPR001611 GO:0005515
Vvi5g1009 840 Gene3D Ribonuclease Inhibitor 1 133 IPR032675 -
Vvi5g1009 840 Pfam Protein tyrosine and serine/threonine kinase 542 648 IPR001245 GO:0004672|GO:0006468
Vvi5g1009 840 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 132 - -
Vvi5g1009 840 Gene3D Transferase(Phosphotransferase) domain 1 528 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1009 - - - vvi:100258860 1041.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76642 PF07714 PK_Tyr_Ser-Thr 1.40E-15 CL0016 Vvi PK