Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1010 ATGGATTCTAATTCCAATCAGGTTGTAGCTCAAGATCCTAGCCCAGCCCAGACCTCCAACCAGGCTGCAAATGGAGATGGCAGCCACACTGTCATCACAGGCATGGATGCGAAAGTGTACAAGGCGGCAGCAAGGGGGAACATTAAAGTCCTCGAAAAAATTTCAGATCATGACTTACTAGTCCATTTAACCCCAAAGCATAACACGATACTCCACATCGCCGCCCAGTTCGGTCAACTGGAGTGTGTGAATTTGATCCTTAGCTTGCCTTCATCTCCAACTCTACTGCAACGCCCTAATCTGAAAGGGGACATTCCGCTTCACCTTGCAGCAAGGGAAGGGCATTTTGAGGTTCTGAAAGCTCTTTTAGACGCTGCCAAAAAACTTCCTACAGATATTGAAACTGGGCTTGAAGCAGATAAATTGATGTTGAGGATGACAAATAAGGAGAAAGACACAGCCTTGCATGAGGCAGTGCGATGTGTCCAATATTTTAGCCAATATTCTTTGGTGAAGTTATTGATTGAGAAAGACCCTGAGTATACTTATGGTGCTAATGTTTCTGGTGGGACTCCTCTTTACATGGCTGCTGAGAGAGGATTTACTGGAATAGTGAAAATTATCCTAAATAAAAGTCACAAAACTCCCACTTCACCAGCGTACAGTGGCTTCATGGGTAGAACGGCCTTGCATGCTGCTGTACTCTGCAATGACGAAGAAATGACCGAGGCGATATTGGAATGGAATCCAGCTCTAACTAAAGAAGTGGATGAGAAAGGGTGGTCTCCACTTCATTGTGCTGCAGAGAGAAATTGTAATCCAACAATTGTGAGGCAACTGCTAGAGAATTCAGATTATAAGAGTGTAGCATATCTTGGGATCAAAGATGATTTCCGGTTCTTATTCGATCGGAAAGTGGATAAGAAGGCGTATAATAGCGAAAACTTGACAGCTTACGACATAATTTCAAGGGCCAAGGAGGACATTTCCAAGAAAAAGATTCTAGAGCAGTTCGAACATGTTATGCCTGAAACTCGATCTTTGCGTTGGAAGAAGATGAGGGAGAGACAGAGAAAAAGGAGAGAGTTCATCACAGCCTACGACATAATTTTGAGGCACGAGGAAAACAGTACAGAGGAAAGGTACAACGAGAAACGCATCGTTGCATTACGAGAACAAGGCAAAAACCATTTGATAGTTTCTACGCTTATAACAACAGTAACTTTTGCTGCGGGTTTCACCTTGCCCGGTGGTTACAAAGATGATAATGGCAAGGCAATTTTATCAAAGAAAGCACTTTTCATAACATTTCGTTGTGACGGATACCATAGCCATGGTCTCCTCACTATGCGTTGTATTTCTTCACTTTTTTATGACCATGCGTAA 1386 43.07 MDSNSNQVVAQDPSPAQTSNQAANGDGSHTVITGMDAKVYKAAARGNIKVLEKISDHDLLVHLTPKHNTILHIAAQFGQLECVNLILSLPSSPTLLQRPNLKGDIPLHLAAREGHFEVLKALLDAAKKLPTDIETGLEADKLMLRMTNKEKDTALHEAVRCVQYFSQYSLVKLLIEKDPEYTYGANVSGGTPLYMAAERGFTGIVKIILNKSHKTPTSPAYSGFMGRTALHAAVLCNDEEMTEAILEWNPALTKEVDEKGWSPLHCAAERNCNPTIVRQLLENSDYKSVAYLGIKDDFRFLFDRKVDKKAYNSENLTAYDIISRAKEDISKKKILEQFEHVMPETRSLRWKKMRERQRKRREFITAYDIILRHEENSTEERYNEKRIVALREQGKNHLIVSTLITTVTFAAGFTLPGGYKDDNGKAILSKKALFITFRCDGYHSHGLLTMRCISSLFYDHA* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17630460 17640343 - Vvi5g1010 Vvi5g1010 787152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1010 461 SUPERFAMILY Ankyrin repeat 40 283 IPR036770 -
Vvi5g1010 461 Pfam Ankyrin repeat 260 283 IPR002110 GO:0005515
Vvi5g1010 461 ProSiteProfiles Ankyrin repeat region circular profile. 102 124 - -
Vvi5g1010 461 Pfam Domain of unknown function 390 437 IPR026961 -
Vvi5g1010 461 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 143 293 - -
Vvi5g1010 461 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 38 129 - -
Vvi5g1010 461 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 303 437 - -
Vvi5g1010 461 ProSiteProfiles Ankyrin repeat profile. 102 124 IPR002110 GO:0005515
Vvi5g1010 461 SMART ANK_2a 188 218 IPR002110 GO:0005515
Vvi5g1010 461 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vvi5g1010 461 SMART ANK_2a 259 291 IPR002110 GO:0005515
Vvi5g1010 461 SMART ANK_2a 150 183 IPR002110 GO:0005515
Vvi5g1010 461 SMART ANK_2a 225 254 IPR002110 GO:0005515
Vvi5g1010 461 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vvi5g1010 461 Pfam Ankyrin repeats (3 copies) 166 246 IPR002110 GO:0005515
Vvi5g1010 461 MobiDBLite consensus disorder prediction 1 28 - -
Vvi5g1010 461 Gene3D - 29 129 IPR036770 -
Vvi5g1010 461 Pfam Ankyrin repeats (many copies) 67 123 IPR002110 GO:0005515
Vvi5g1010 461 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 143 293 - -
Vvi5g1010 461 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 303 437 - -
Vvi5g1010 461 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 38 129 - -
Vvi5g1010 461 Gene3D - 130 338 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1010 - - - vvi:109122695 499.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84