Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1015 ATGGTTATCCCAATTCAATCTATCATACCATGTTTTCAAGGAAGTGGATATGATATTTGGAGTTCAAAGATGAGGACTCTTTTTATCTCTGAAGATTTGTGGGAGCTTGTGGATATGGGTTATATAGAAGAGGAGATTTCAAAAAATGCTATTAGAGATGTACGAAAGAAAGATGCTAAAGCATTGTTTCTTATTCAACAAGCAATTGCAGAAAATATTTTTCCTCAAATTTCAAAGGCAACAAAGTCCAAAGAAGCTTGGGATGCTTTACAAATAGAATATCAAAGAACAACTAAGGTTGCAACTCAAGATGGAGATGGTAGCCAAACTAACATCAAAACCATGGTAGACATTGTGTATGAGGCGGCAGCAATGGGGGACATTAAAATCTTGGAGGAAATTCCGGAGTCTGAATTTGAAGTCCAATTAAGCCCAAAGCATAATACAATACTCCATATCGCAAGCGAATTTGGTCAAACAGATTGTGTGAAATGGATCCTTGAGTTGCCTTCATGTTCATCTCTACTGCAACGCCCTAATATGAATGGGGACACTCCGCTTCACCTTGCAGCAAGGGAAGGACATTTAGAGGTAGTCGAAGCTCTTATAAATACTGCAAAACAACTTCCCTTGGATATTGAAACTAAGACCAGTTCAGAAAAGGTTATGTTAAGGATGACAAACAAGGGGAAAGACACAGCCTTGCATGAGGCAGTGCGATATTGGCATTCTGATGTAGTGAAGTTACTAATTGAGGAGGACCCTGATTTTAGCTATGGTGCTAATGATTCAGGTACGACTCCTCTTTACATGGCTGCGGAGAGAGGATATAGGGACGTGGTGAAAATAATCATAGACAATAGTACTTCACCATCTTACAATGGCTTAATGGGTAGAACGGCCTTGCACGCTGCTGTAATATGCAATAACCAAGGTAGAAAGTGCATTTATTTATTTTATGAGAATGGGTGGTCTCCACTTCACTGTGGTGCAGAGAGAGGTTGTGATCCAACAATAGTGGGTGAATTACTAAATATAGATAAGAGTGTAGCCTACCTTACGATTAAAGATGGGAACAAGACTGCCCTTCATATTGCATCTTTCCACCATCATACTAAAATAGTAGAGGAGATCGTATCTCACTCTCCTGGTTGTCGGGAGCAGGTCGATGACAAGGGCAATAATGCTTTTCACTTTGCCATGATGAAAAAGGGAGATGATGATTATTACATTCATAGTTATTTTAGAAACAAATGGTTAAGAACTAGAGGACTTGTAAATGAGAAAGATGCTCAAGGAAACACACCTCTCCACCTACTCTCTTGTTACCAAATTCAACGTTTCAGCGAAAAGGGTAAGATCCAAGAGCAGTTCGAGTGGGCTATGCCCGGTAATACATCTATGGCTATGGAGAAGTCAATGAAGAAATTGAAGAAAGAGACAGAAAGCAAAGAGTACAAGGAGAAATACACCTCTGAATTACGAAAACAAGGTGAAACCCATTTGATAGTTTCCGCGCTTATAACAACAGTAACTTTTGCTGCGGGTTTCACCTTGCCCGGTGGTTACAAAGAAGATGATGGCAAGGCAATTTTATCAAAGAAAGCAGCTTTCGGAGCATTTGTTGTGACGGATACCATAGCCATGGTGTCTTCACTATGCGCCGTATTTCTTCACTTTTTTATGACCATGCGCAAAGATGATGAGTTCCTTGAGAAGCACTTGCTTTGGGCTTTTATTTTCACCATGGTTGGGATGGGAGCAATGGCGATCGCTTTCGCAACCGGCTTGTACGTTGTTTTACCGCATTCCTCGGGCCTTTCATTTCTCAGTTGCATCCTCTGTTCTTGCTTTTTCCTCTCCTTTGTTGTTGAATATTGTCAATTTTGGAGAGGTACGATTTCGGACATGAGTATTGAACTGATTTATCTGACCTGA 1938 40.4 MVIPIQSIIPCFQGSGYDIWSSKMRTLFISEDLWELVDMGYIEEEISKNAIRDVRKKDAKALFLIQQAIAENIFPQISKATKSKEAWDALQIEYQRTTKVATQDGDGSQTNIKTMVDIVYEAAAMGDIKILEEIPESEFEVQLSPKHNTILHIASEFGQTDCVKWILELPSCSSLLQRPNMNGDTPLHLAAREGHLEVVEALINTAKQLPLDIETKTSSEKVMLRMTNKGKDTALHEAVRYWHSDVVKLLIEEDPDFSYGANDSGTTPLYMAAERGYRDVVKIIIDNSTSPSYNGLMGRTALHAAVICNNQGRKCIYLFYENGWSPLHCGAERGCDPTIVGELLNIDKSVAYLTIKDGNKTALHIASFHHHTKIVEEIVSHSPGCREQVDDKGNNAFHFAMMKKGDDDYYIHSYFRNKWLRTRGLVNEKDAQGNTPLHLLSCYQIQRFSEKGKIQEQFEWAMPGNTSMAMEKSMKKLKKETESKEYKEKYTSELRKQGETHLIVSALITTVTFAAGFTLPGGYKEDDGKAILSKKAAFGAFVVTDTIAMVSSLCAVFLHFFMTMRKDDEFLEKHLLWAFIFTMVGMGAMAIAFATGLYVVLPHSSGLSFLSCILCSCFFLSFVVEYCQFWRGTISDMSIELIYLT* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17782033 17785629 - Vvi5g1015 Vvi5g1015 787157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1015 645 Gene3D - 116 316 IPR036770 -
Vvi5g1015 645 Gene3D - 317 444 IPR036770 -
Vvi5g1015 645 ProSiteProfiles Ankyrin repeat profile. 230 262 IPR002110 GO:0005515
Vvi5g1015 645 ProSiteProfiles Ankyrin repeat region circular profile. 264 290 - -
Vvi5g1015 645 Pfam Domain of unknown function 493 600 IPR026961 -
Vvi5g1015 645 SUPERFAMILY Ankyrin repeat 120 404 IPR036770 -
Vvi5g1015 645 Pfam gag-polypeptide of LTR copia-type 55 100 - -
Vvi5g1015 645 Pfam Ankyrin repeats (3 copies) 262 318 IPR002110 GO:0005515
Vvi5g1015 645 Pfam Ankyrin repeats (3 copies) 151 255 IPR002110 GO:0005515
Vvi5g1015 645 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 146 209 - -
Vvi5g1015 645 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 219 442 - -
Vvi5g1015 645 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 471 621 - -
Vvi5g1015 645 PRINTS Ankyrin repeat signature 183 198 IPR002110 GO:0005515
Vvi5g1015 645 PRINTS Ankyrin repeat signature 246 260 IPR002110 GO:0005515
Vvi5g1015 645 ProSiteProfiles Ankyrin repeat region circular profile. 182 204 - -
Vvi5g1015 645 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 146 209 - -
Vvi5g1015 645 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 471 621 - -
Vvi5g1015 645 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 219 442 - -
Vvi5g1015 645 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Vvi5g1015 645 SMART ANK_2a 146 177 IPR002110 GO:0005515
Vvi5g1015 645 SMART ANK_2a 322 352 IPR002110 GO:0005515
Vvi5g1015 645 SMART ANK_2a 264 293 IPR002110 GO:0005515
Vvi5g1015 645 SMART ANK_2a 358 387 IPR002110 GO:0005515
Vvi5g1015 645 SMART ANK_2a 230 259 IPR002110 GO:0005515
Vvi5g1015 645 SMART ANK_2a 182 211 IPR002110 GO:0005515
Vvi5g1015 645 ProSiteProfiles Ankyrin repeat profile. 182 204 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1015 - - - vvi:104879355 1192.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1015 Blo01g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84