Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1016 ATGCTCAAGTTGTATCTTGAGGAAATACTACAGCCGTGGTTGATCTGGATCAGTTTGTCACTAAGGATATTATACCGATCAACGAGAAAGAAGTCAAGTCCAATGGTTCTCTCTTCAGAAATCACCCCGTCTTCACCACCGTTGTCGTCACCGCCTCAATCAGCAGAAAAACCACCTGAGAAAATCGAAGAAGCTTCTGAAAAAAGGGAACCAAACCCAGTAGCAGAATCGGAGATCAGCACCCAAGAAGAGAGTGCTAAAGATGAAAATGTGAAACCCACACCAAACCCAACAATTGAATCCATTCTCAAGCACGAAAGCCCAACTCAAGAGGATGTGTCCATCTGGGGGATTCCACTGCTGAAAGACGAGAGAAGCGATATGATTCTTCTCAAATTTCTGAGGGCGAGAGAGTTCAAGGTGAAGGAAGCTTTCGCCATGCTAAAAAAAAACACCATCTTTTGGAGGAAAGAGTTTGGCATTGACGCATTGGTGGATGATGATTTGGGTGAGCACTTGGAGAAGAGGATGAAGTTCCTGAGATGGAGGATTCAGTTCTTGGAAAGGAGTATCAGGAAGCTTGATTTCACCCCTGGCGGCGTCAACACCATCTTTCAGGTTAATGATCTTAAGAATTCTCCCGGACCCGGAAAATGGGAACTTAGGCAAGCCACCAAACAGGCCCTCCAGCTGCTGCAGGACAATTACCCTGAATTCGTTGCTAAACAGGTGTTCATCAATGTTCCTTGGTGGTATCTCGCATTCTATATGATGATCAGTCCATTCTTGACTCAGAGGACCAAGAACAAGTTTGTATTTGCAAGCTCAGCCAAATCTGCCAAAACACTTTTCAAATACATATCTCCTAAGCAAGTCAGGGTAGTTGGGTGGGAGGTTGCCTACGGAGCTGAGTTCATTCCTGATGCTGAAGATGAGTATACCGTGGTTGTACAGAAGGCAACAAAGATGGCCCCAACTGATGATCCAGTAATGTGTAACAGTTCCAAAATCAAGCAACTCAGAGATGATTTGAAGGACATGGCCTTTGAGATGAATTCTTTGATGGAGGAATTGAAGGTTGTCAAAAAAGAGAGTCTCATTGAGAAGTTTGTGGCTGGTCTCTCTATGGATATCTTACAGTTTCATACAGTTGCACCTTTGGGGGACCCACTTTTGCATGGTTTGCATGGCCACCTTTAA 1200 44.5 MLKLYLEEILQPWLIWISLSLRILYRSTRKKSSPMVLSSEITPSSPPLSSPPQSAEKPPEKIEEASEKREPNPVAESEISTQEESAKDENVKPTPNPTIESILKHESPTQEDVSIWGIPLLKDERSDMILLKFLRAREFKVKEAFAMLKKNTIFWRKEFGIDALVDDDLGEHLEKRMKFLRWRIQFLERSIRKLDFTPGGVNTIFQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYMMISPFLTQRTKNKFVFASSAKSAKTLFKYISPKQVRVVGWEVAYGAEFIPDAEDEYTVVVQKATKMAPTDDPVMCNSSKIKQLRDDLKDMAFEMNSLMEELKVVKKESLIEKFVAGLSMDILQFHTVAPLGDPLLHGLHGHL* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17883818 17885733 - Vvi5g1016 Vvi5g1016 787158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1016 399 Pfam CRAL/TRIO, N-terminal domain 109 150 IPR011074 -
Vvi5g1016 399 PANTHER PATELLIN-3 292 371 - -
Vvi5g1016 399 PANTHER PATELLIN-3 174 292 - -
Vvi5g1016 399 PANTHER PATELLIN-3 64 175 - -
Vvi5g1016 399 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 178 313 IPR001251 -
Vvi5g1016 399 Coils Coil 337 364 - -
Vvi5g1016 399 SUPERFAMILY CRAL/TRIO domain 174 292 IPR036865 -
Vvi5g1016 399 CDD SEC14 178 292 IPR001251 -
Vvi5g1016 399 MobiDBLite consensus disorder prediction 57 74 - -
Vvi5g1016 399 Gene3D - 55 173 IPR036865 -
Vvi5g1016 399 Gene3D - 174 324 IPR036865 -
Vvi5g1016 399 MobiDBLite consensus disorder prediction 35 106 - -
Vvi5g1016 399 PANTHER PATELLIN-1 64 175 IPR044834 GO:0008289
Vvi5g1016 399 PANTHER PATELLIN-1 292 371 IPR044834 GO:0008289
Vvi5g1016 399 PANTHER PATELLIN-1 174 292 IPR044834 GO:0008289
Vvi5g1016 399 SMART sec14_4 160 306 IPR001251 -
Vvi5g1016 399 Pfam CRAL/TRIO domain 176 292 IPR001251 -
Vvi5g1016 399 SMART CRAL_TRIO_N_2 126 151 IPR011074 -
Vvi5g1016 399 SUPERFAMILY CRAL/TRIO N-terminal domain 116 168 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1016 - - - vvi:100247827 532.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1016 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000709 2 3 3 2 2 3 4 3 3 3 3 3 4 2 3 4 3 7 4 3 3 3 4 3 3 3 3 3 3 4 96