Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1018 ATGGCTACTGAGAGTCCCATTAGAATGTTGGAAACAAGTGGAAAATGGCCGTCTCCTAAGGAGACTGCAACGTTTGCACCATCATCCTCTAGCATGGCTGCAGAAGAGTTGAGCTTGCTTCTGACGGACCATAGGTTTTTTGGCAATGGGAGGGATGTTGCCCCTAATCGAAGTGGGAGTGCTCCGCCAAGCATGGAAGGTTCTTTTGCTGCCATAGAAAACCTTATGTCCTCACAGAACTCCAGCTTGAATGCAAGGTATGCAAATCTAAACAGTTTAATTGAAAACTGTGAGCCTGAGGAGCAGTTACGTGCTGACCCTGCTTATTTAGCATATTACTGTTCCAAAATCAACTTGAATCCTAGACTTCCTCCACCTCTAATCTCATGGGAGAACAGGCGTCTGGTACGGCATATTGGTAGTTTTGGAAATAGTCGGGGATTAACTTCTTTAGATGACAGTGGTGGCAGATCGCTCCGTTTGTCTCAAGGTACCCTTTCTACCCACAAGGAAGAGTCTGAGGATGACAGATCACCTCAAAAACCTTCTGATGATTGGGAAGACCAAAGCAGTGCGTTCTGGTCTGGACAGGATGCAGCTTTCCTGGCAGGCCAGCATAGAAGTTCAGTCGATTTGATACAGGATGATTTCCCCAGAACTCCATCGCCTGTATATAATCAGTCTCGCTCCTTAATACATGGATCACCAGGGAAAACAGTTGAACATGATGCAGATAGCAGCTCCTTGCATGATTCCTCTGTCGGCACATCAAATTTAGTTGCATCTACTCTGGTCACAGATAATTTGGGACCATCATCAAATGCTAATCCTGCAATTGCCCCTGTATCAAACTCATTGTCTCTTGACGGTACTGGCAGCACACCTCCCTCACCAGCTCTTATTGAACGAGATGCCCACAATTTAGATGTCCATTTAGAGGATGATGTCTTAATTGGTGGTATTACTGTTTCAGATTTTGTCAGTACTGAATCTAAAATGAAGGATAGTAATACATCTAGTCTGCCAAATTCAGGGAACAAAAAAAACCAAGAAGATTGGCACCACAACCGTCAGAAAAACTGGCTGCAACACCAGGTACATCAACAACAGGGCAATTCATTTCAAGTTCAAGGTGCCAAGTCTCAAATGGTTTTTCAAGGAACAAACCATACAAACATTAACATGGATCAATATCTCCATGGTTCCTCCAAGTTTTCAACTGAGGCACAGCCTGTGCTTCAGTCATCTGGATTCACACCTCCACTCTATGCAACTGCAGCAGCTTATATGACTTCAGCAAATCCATTTTACCCCAATCTGCAACCTCCAGGTTTATTTTCTCCACAGTACAGTTTTGGTGGATTTGCTTTGAATACTGCAGTTCTTCCTCCATTTGTAGCTGGATACCCTCCTCATGGTGCTATTCCCTTGGCTTTCGATAACACTGTGGGTCCCAGCTTTAATGCTCAAACTTCTGCTGTTTCAACCGGGGAAAGCATCACCCAAGCAGTTGATATGCAACATTTAAACAAGTTCTATGGACAGCTTGGATATGCGCCACAGCCTTCTTTTGCTGATCCTCTTTATATGCAATACTTTCAACAGCCTTTTGGGGATGTATATAGTGTTTCAGGTCAATTTGATCCACTGGTATCTAGAGGTGGTGTTATTGGGAGCCAGGTCAGTGCTTTTGAGACACACAGAGAGTCTGATGTTGCTTCTTGCTCAGTTGACAAGAAACTCCAACATCAGAGAAGTGGGGGCCTAACTAATCTGAACCATAGAAGAGGGGGCATTGCAAGTCCTAATTATCATGGAAGCCCAACAAACATGGGTATGTTGATGCAATTCCCAACCTCACCTCTTGCAAGTCCAGTTTTACCAAGAAGCCCAGCAGGTGTGACCTGTCTTCCTGGAGGGAGAAATGAAATAAGGTATCCTCCTGGTTCTGGCAAAAATGTAGGCATATTTTCTGGATGGCAAGGTCAAAGAGGATATGATGACCCAAAAACACATTCTTTTCTTGAAGAGTTGAAATCCGGAAAAGGTCGAAGATTTGAGCTATCTGATATTGCAGGGCATATTGTTGAATTCAGTGCTGATCAACATGGAAGCCGCTTCATTCAACAGAAATTGGAAAATTGTAGTGTTGAAGAGAAGGCATCTGTATTTAAAGAAGTACTCCCACATGCTTCCAAATTAATGACTGATGTTTTTGGTAACTATGTTATTCAAAAGTTTTTTGAACATGGAAACCCTGAGCAGAGGAAGGAGCTGGCAAGTCAACTTGCAGGCCAGATTTTGCCTTTAAGTTTGCAGATGTATGGTTGTCGTGTAATTCAAAAGGCACTTGATGTTATTGAGCTTGAACAGAAAACACTTCTTGTCCGTGAGCTGGATGGACATGTTATGAGATGTGTCCGTGACCAAAATGGAAATCATGTAATACAGAAGTGCATTGAGAGTGTTCCAACAGAGAAAATTGGATTCATTATCTCTGCTTTTCGTAGTCATGTTGCAACACTTTCTACGCATCCTTATGGTTGCCGTGTCATTCAGAGAGTTCTAGAACATTGTACGGATGAATTACAAAGCCAATTTATTGTGGATGAGATCCTGGAATCTATCTGTTCCCTTGCTCAGGATCAGTATGGCAATTATGTTACTCAGCATGTATTGGAGAGAGGGAAGCCTCATGAAAGAAGCCAAATTATTAACAAGCTGAAAGGTCATATTGTACAACTGAGTCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGACGTCAATGAACGGGGACTCTTGATTGAGGAGATCATTGGCCATAATGAAGGGAATGACAATTTATTGATAATGATGAAAGACCAATTTGCTAATTATGTCATTCAGAAGATTCTTGACATCTGTACTGATAATCAGCGGGAATCATTGTTTGTTCGTATAAGAGTTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTTTCTCGATTTGAACAGCTATTTGGAGAAGAAATTGAGGCATCGTGA 3054 42.21 MATESPIRMLETSGKWPSPKETATFAPSSSSMAAEELSLLLTDHRFFGNGRDVAPNRSGSAPPSMEGSFAAIENLMSSQNSSLNARYANLNSLIENCEPEEQLRADPAYLAYYCSKINLNPRLPPPLISWENRRLVRHIGSFGNSRGLTSLDDSGGRSLRLSQGTLSTHKEESEDDRSPQKPSDDWEDQSSAFWSGQDAAFLAGQHRSSVDLIQDDFPRTPSPVYNQSRSLIHGSPGKTVEHDADSSSLHDSSVGTSNLVASTLVTDNLGPSSNANPAIAPVSNSLSLDGTGSTPPSPALIERDAHNLDVHLEDDVLIGGITVSDFVSTESKMKDSNTSSLPNSGNKKNQEDWHHNRQKNWLQHQVHQQQGNSFQVQGAKSQMVFQGTNHTNINMDQYLHGSSKFSTEAQPVLQSSGFTPPLYATAAAYMTSANPFYPNLQPPGLFSPQYSFGGFALNTAVLPPFVAGYPPHGAIPLAFDNTVGPSFNAQTSAVSTGESITQAVDMQHLNKFYGQLGYAPQPSFADPLYMQYFQQPFGDVYSVSGQFDPLVSRGGVIGSQVSAFETHRESDVASCSVDKKLQHQRSGGLTNLNHRRGGIASPNYHGSPTNMGMLMQFPTSPLASPVLPRSPAGVTCLPGGRNEIRYPPGSGKNVGIFSGWQGQRGYDDPKTHSFLEELKSGKGRRFELSDIAGHIVEFSADQHGSRFIQQKLENCSVEEKASVFKEVLPHASKLMTDVFGNYVIQKFFEHGNPEQRKELASQLAGQILPLSLQMYGCRVIQKALDVIELEQKTLLVRELDGHVMRCVRDQNGNHVIQKCIESVPTEKIGFIISAFRSHVATLSTHPYGCRVIQRVLEHCTDELQSQFIVDEILESICSLAQDQYGNYVTQHVLERGKPHERSQIINKLKGHIVQLSQHKFASNVVEKCLEYGDVNERGLLIEEIIGHNEGNDNLLIMMKDQFANYVIQKILDICTDNQRESLFVRIRVHAHALKKYTYGKHIVSRFEQLFGEEIEAS* 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17963633 17985356 + Vvi5g1018 Vvi5g1018 787160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 146 190 - -
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 762 797 IPR001313 GO:0003723
Vvi5g1018 1017 PANTHER PUMILIO HOMOLOG 5 45 1013 - -
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 943 984 IPR001313 GO:0003723
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 329 354 - -
Vvi5g1018 1017 Gene3D - 669 1013 IPR011989 -
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 690 725 IPR001313 GO:0003723
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 146 166 - -
Vvi5g1018 1017 SUPERFAMILY ARM repeat 673 1006 IPR016024 -
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 871 906 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 907 942 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 871 906 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 949 984 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 762 797 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 798 833 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 834 870 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 690 725 IPR001313 GO:0003723
Vvi5g1018 1017 SMART pum_5 726 761 IPR001313 GO:0003723
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 726 761 IPR001313 GO:0003723
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 834 870 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Nucleic acid binding protein NABP 336 689 IPR012940 -
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 694 728 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 766 799 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 911 945 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 876 908 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 731 762 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 955 983 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 838 873 IPR001313 GO:0003723
Vvi5g1018 1017 Pfam Pumilio-family RNA binding repeat 808 832 IPR001313 GO:0003723
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 213 253 - -
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 329 347 - -
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 220 234 - -
Vvi5g1018 1017 CDD Pumilio 685 1005 IPR033712 GO:0003723
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 907 942 IPR001313 GO:0003723
Vvi5g1018 1017 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 1013 - -
Vvi5g1018 1017 ProSiteProfiles Pumilio RNA-binding repeat profile. 798 833 IPR001313 GO:0003723
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 167 184 - -
Vvi5g1018 1017 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 670 1010 IPR033133 GO:0003723
Vvi5g1018 1017 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1018 K17943 PUM; pumilio RNA-binding family - jre:108984405 1340.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007685 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 3 36