Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1024 ATGACCTGGAACGTCTGGCCCAGGACCAAGGTGGAGGCCAGCAAGTGCGTGATCCCAATCGCCGCTTCGGTTTCTCCGATCCGATCGCATCCTGACATCCCCACGCTCCCCTACGCGCCGCTTCGTTGCAAGACCTGCATCTCCCTTCTCAACCCCTTCTGCCGCGTAGACTTCGCCGCCAAGATCTGGATCTGCCCATTTTGCTTCCAGCGCAACCACTTCCCACACCACTACTCCATGATCTCCGAATCCAACCTCCCCGGCGAGCTCTACCCGCAATACACGACCGTTGAGTACTCTCTTTCTAACCCTGGGGCGTCCATTCCGCCGGTGTTTCTTTTTGTGCTTGATACGTGTATGATTGAGGAGGAGTTGGGGTTTGTGAAATCGGCGCTTAAGAGGGCGATCGGATTGCTGCCGGAGAATGCGCTGGTGGGGTTTGTGTCGTTTGGAACGCAGGAGATTTCCAAGGACCAGGGGGTGCAGAATGGGTATGCGAGTTCGGGGGTTACGCGGTTTTTACTGCCGGCGTCGGACTGCGAGTATACTCTTAATTCGTTATTGGATGAATTGCAAACGGATCAGTGGCCGGTGCAACCAGGTCATAGGGCGTTGCGGTGCACCGGAGTGGCGCTGAGTGTTGCGGCAGGTTTGCTTGGCGCTTGTTTGCCTGGCACTGGTGCAAGGATTATAGCTTTAGTTGGGGGTCCTTGCACAGAAGGCCCGGGAACGATTGTATCAAAAGATTTATCAGATCCAGTACGTTCTCATAAAGATCTTGATAAGGATGCAGCACCATATTTTAAGAAAGCAGTCCAATTTTATGAAAATATTGCAAAGCAAATGGTCAGCCAAGGTCACGTCTTGGACCTTTTTGCTTCTGCTCTTGATCAGGTTGGGGTTGCAGAGATGAAAGTTGTGGTTGAAAGAACAGGTGGTCTTGTTGTTCTGGCTGAAAGTTTTGGTCATTCCGTATTTAAAGACTCTTTCAAGCGCATTTTTGAAGAAGGGGAACAGTCTCTTGGCCTCTCTTTTAATGGTACACTGGAGATCAACTGTTCAAAGGACATCAAAATTCAAGGGATCATTGGACCATGCACATCTTTGGAGAAGAAAGGACCTTCTGTTGCTGATACAGTCATTGGAGAGGGGAGTACCACATCATGGAAGATGTGTGGCCTTGACAAGACTACTTGCTTGACAGTTTTCTTTGATATTTCATCTAGTGAGCGGTCAAATCCTCCAGGAACTTCAAATCCACAGTTGTATTTGCAGTTTATTGTCAGTTATCAAAATCCTGAAGGTCAAACAAGGCTCCGAGTTACAACTGTTACTAGAAGATGGGTAGATAGTGCTGTCAGCTCAGAGGAATTGGTGCAAGGATTTGATCAGGAGACTGCTGCTGTGGTAATGGCGAGATTAACTTCTCTGAAAATGGAGACAGAGGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAAACCCTTGTTTTTCATTGTTCCCTCAGTTTATGTTTAATCTGCGACGATCACAATTTGTACAGGTTTTCAACAATAGTCCAGATGAAACGGCCTATTTCCGTATGTTGTTAAACCGTGAGAATATTCCAAATACTGCGGTCATGATCCAGCCATCTCTAATATCATATTCATTCAATTCACTTCCTGCACCAGCATTGTTAGATGTGGCTTCTATTTCAGCCGACCGAATTCTTTTGCTAGATTCATATTTCAGTGTCGTTATTTTCCATGGCATGACAATAGCTCAGTGGCGTAACATGGGTTACCAGAATCAACCAGAACACCAGGCATTTGCTCAGCTATTGCAAGCTCCTCAGGATGATGCTAAACTTATCATCCATGATAGGTTCCCTGTCCCAAGATTGGTGGTATGTGATCAGCATGGCTCCCAGGCAAGATTCTTATTGGCAAAGTTGAACCCATCAGCTACATACAACAATGCCCATGAAATGGCAACTGGGTCAGATGTGATCTTCACAGATGATGTGAGCCTTCAAGTGTTCTTTGAGCATCTCCAGAGGCTGGCTGTGCAATCATGA 2124 46.89 MTWNVWPRTKVEASKCVIPIAASVSPIRSHPDIPTLPYAPLRCKTCISLLNPFCRVDFAAKIWICPFCFQRNHFPHHYSMISESNLPGELYPQYTTVEYSLSNPGASIPPVFLFVLDTCMIEEELGFVKSALKRAIGLLPENALVGFVSFGTQEISKDQGVQNGYASSGVTRFLLPASDCEYTLNSLLDELQTDQWPVQPGHRALRCTGVALSVAAGLLGACLPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVQFYENIAKQMVSQGHVLDLFASALDQVGVAEMKVVVERTGGLVVLAESFGHSVFKDSFKRIFEEGEQSLGLSFNGTLEINCSKDIKIQGIIGPCTSLEKKGPSVADTVIGEGSTTSWKMCGLDKTTCLTVFFDISSSERSNPPGTSNPQLYLQFIVSYQNPEGQTRLRVTTVTRRWVDSAVSSEELVQGFDQETAAVVMARLTSLKMETEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPCFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENIPNTAVMIQPSLISYSFNSLPAPALLDVASISADRILLLDSYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLQAPQDDAKLIIHDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMATGSDVIFTDDVSLQVFFEHLQRLAVQS* 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18260679 18285830 + Vvi5g1024 Vvi5g1024 787166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1024 707 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 154 IPR037364 -
Vvi5g1024 707 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 165 706 IPR037364 -
Vvi5g1024 707 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 566 706 IPR036180 -
Vvi5g1024 707 Pfam Sec23/Sec24 helical domain 463 560 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vvi5g1024 707 Pfam Sec23/Sec24 zinc finger 40 78 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi5g1024 707 Pfam Sec23/Sec24 trunk domain 109 334 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vvi5g1024 707 Pfam Gelsolin repeat 575 663 IPR007123 -
Vvi5g1024 707 SUPERFAMILY Helical domain of Sec23/24 463 565 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vvi5g1024 707 SUPERFAMILY Zn-finger domain of Sec23/24 31 103 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi5g1024 707 Gene3D Severin 565 669 IPR029006 -
Vvi5g1024 707 SUPERFAMILY vWA-like 108 335 IPR036465 -
Vvi5g1024 707 Gene3D - 37 96 - -
Vvi5g1024 707 SUPERFAMILY beta-sandwich domain of Sec23/24 1 462 - -
Vvi5g1024 707 CDD Sec23_C 555 675 IPR037550 GO:0030127|GO:0090114
Vvi5g1024 707 Gene3D - 1 446 - -
Vvi5g1024 707 Gene3D Sec23/Sec24 helical domain 460 704 - -
Vvi5g1024 707 Gene3D von Willebrand factor, type A domain 109 343 IPR036465 -
Vvi5g1024 707 Pfam Sec23/Sec24 beta-sandwich domain 345 449 IPR012990 -
Vvi5g1024 707 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 165 706 - -
Vvi5g1024 707 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1024 K14006 SEC23; protein transport protein SEC23 - vvi:100262252 1378.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42