Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1028 ATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCTCGGCACTCATTGCTATGATTGCTGATGAGGACACTATAACTGGGTTTTTGCTGGCTGGAGTGGGTAATGTTGACTTGCGGAGAAAGACAAATTATCTCATTGTTGACTCAAAAACAACTGTAAAACAAATTGAAGATGCATTCAAGGAATTCACCACAAAGGAAGACATTGCTATCATTTTAATAAGCCAATATGTTGCGAACATGATAAGGTTCCTAGTAGATAGCTACAACAAGCCGGTACCAGCAATTCTGGAGATTCCATCCAAGGACCATCCTTACGATCCTGCTCATGATTCAGTTCTCTCACGAGTGAAGTACCTCTTCTCTGCTGAGTCTGTGGCATCCGGAAGGCGTTGA 393 43.26 MAGRAQIPTKSSALIAMIADEDTITGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTKEDIAIILISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASGRR* 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18363003 18370088 - Vvi5g1028 Vvi5g1028 787170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1028 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Vvi5g1028 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 130 - -
Vvi5g1028 130 SUPERFAMILY AtpF-like 15 99 IPR036906 GO:0034220
Vvi5g1028 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Vvi5g1028 130 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 1 130 - -
Vvi5g1028 130 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 12 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Vvi5g1028 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1028 K02151 - vvi:100267411 253.062