Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1034 ATGCATGCTATATACCATTTCAAAGATCAGGAAGTCAACAATCTAATGCTTCAAACGGTGCACAATTCGGAGTTGAAACGAAGAATCTTTGAGTCAAAACAAAGAGGAAGCAGCTCACAATTCCTCCAAAACATCATTGCAAACGTCATAGCTCTGTTTCCCCAAATTCGTCATTACAAACGTCATTCCATACTCTGCCTTCCTTATTTAAAGAGTCCCATGCAGATGCAGATGCAGTTCGATACACAAGTCAGATTTGATCATCCTCTACATAGACCCAACCGAAGTATCTCCACTTCATCTTCTTCCCCTACAATGACACAACCCCACTTCATTGTGATAACCTATCCCGCACAAGGCCACATCAACCCTTCTCTCCAACTGGCTAAGCGCCTCATACGTGCTGGTGCCCATGTCACATTCGTCACTAGCACCTATGCCAGTGAGCGCATGACCAAAACCCCCACCATGGATGGTTTAAAATTTGTCACATTCCCGGACGGCTGCGACAGTGGCCTCAAGCAAAGCGATGCCCTCCAAGGCTTCATGTCTGAGCTTGAGCGTCTTGGCTCCCAAGCTCTTACCGACCTCCTCATAGCCAGCGCTAATGAAGGTCGTCCCGTTACTTGCATAATCTACGGCATCCTGATTCCTTGGGTAGCAGAGGTGGCGCATAGTCTTCACATCCCCTCCGCACTTTTTTGGAGTCAACCTGTCTCTGTTTTTAATATCTATTATTATTATTTTTGTGGCTATGGAGAGGTCATTCGCAAGAAAGTCAGTGACTCCTCGCCTTCCATTGAATTACCAGGACTGCCCTTGCTCGGTAGCCGTGACATTCCCTGTTTCCTACTCCCCTCAAATGCAAATGAATACAACTTTGTCCTTTCAGCGTTTCAGAAGCACGTAGAGATGCTCCACCGTGACACCAACCCAACGGTACTGATAAACACTTTCGATGCATTGGAACCAGAGGCCCTAAGGGCCGTCAGTAAGTTTAAGTCGATTGGAGTTGGACCCTTGTTTCCAACCGCTTTCTTGGGTGGAAAAGATCCATCCGATACTTCATTTGGAGGTGATCTGTTCCGTCGTTCAAAGGATTATATTGAATGGCTGAACTCAAAGCCTGAATCTTCTGTCATTTATGTGTCATTTGGAAGCCTCGCGGTGTTATCGAAGCAACAGTCAGAGGAGATTGCTCGTGGATTGCTGGACAGTGGCCGGCCTTTCCTGTGGGTCATAAGAGCCAAGGAGAAGGGAGAAGAGGAGAAAGAAGAAGATAAACTAAATGGAGAGGAGGCGAAAGAAATGAGAAGGAATGCAAAGAAATGGAAGGGTTTGGCAAGGGAGGCTGTGATGGAAGGTGGATCATCTGACAAGAATCTTAAGAATTTTATGGATGAGTCAAAACAAAAGGGAACCAGCTCGCAATTCCTCCGATACATCATTACCGACGTCATAGCTCTATTCCCCCAATTCTATCTAATCTCAGGCAAAATTCACTGGTTTGATGAAGGTTATAGAACAAAACTTGTGTTATTCTTATCTTTGTTTTTGATGAACTTTAAAGCATTTAAAAAGATTCAACTGGTAAGAAGTATTTTTGCCTTGGGAAGATGTTGGTTATGGATTAAAAGCAAAAAAGACCCTTGTACATATTTTTGGGTACCTGTCAAAACCCTTATAATTTCTCAGGACTGCCCTTGCTCAGTAGCCGTGACATTCCCTGTTTCCTACTCCCCTCAAATGCAAATGAATACAACTTCGTCCTTTCAGCGTTTCAGAAGCACCTAG 1794 44.59 MHAIYHFKDQEVNNLMLQTVHNSELKRRIFESKQRGSSSQFLQNIIANVIALFPQIRHYKRHSILCLPYLKSPMQMQMQFDTQVRFDHPLHRPNRSISTSSSSPTMTQPHFIVITYPAQGHINPSLQLAKRLIRAGAHVTFVTSTYASERMTKTPTMDGLKFVTFPDGCDSGLKQSDALQGFMSELERLGSQALTDLLIASANEGRPVTCIIYGILIPWVAEVAHSLHIPSALFWSQPVSVFNIYYYYFCGYGEVIRKKVSDSSPSIELPGLPLLGSRDIPCFLLPSNANEYNFVLSAFQKHVEMLHRDTNPTVLINTFDALEPEALRAVSKFKSIGVGPLFPTAFLGGKDPSDTSFGGDLFRRSKDYIEWLNSKPESSVIYVSFGSLAVLSKQQSEEIARGLLDSGRPFLWVIRAKEKGEEEKEEDKLNGEEAKEMRRNAKKWKGLAREAVMEGGSSDKNLKNFMDESKQKGTSSQFLRYIITDVIALFPQFYLISGKIHWFDEGYRTKLVLFLSLFLMNFKAFKKIQLVRSIFALGRCWLWIKSKKDPCTYFWVPVKTLIISQDCPCSVAVTFPVSYSPQMQMNTTSSFQRFRST* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18426698 18461920 + Vvi5g1034 Vvi5g1034 787176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1034 597 Gene3D Glycogen Phosphorylase B; 97 354 - -
Vvi5g1034 597 Gene3D Glycogen Phosphorylase B; 429 451 - -
Vvi5g1034 597 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 109 423 - -
Vvi5g1034 597 Gene3D Glycogen Phosphorylase B; 355 428 - -
Vvi5g1034 597 Gene3D Glycogen Phosphorylase B; 452 465 - -
Vvi5g1034 597 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 109 423 - -
Vvi5g1034 597 CDD GT1_Gtf-like 109 415 IPR002213 GO:0008194
Vvi5g1034 597 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 105 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1034 - - - vvi:100855271 696.427
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1034 . . . . . . . . . . . . . . . . . Bhi01g01167 . . . . . Lcy11g1279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01620 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63