Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1048 ATGGCTCCTCCTCACTTCCTCCTTGTCAGCTATCCAGCGCAAGGCCACATCAATCCAACTCTCCGGTTGGCCAAGCGGCTAATACAAACCGGTGCTCAGGTCACCTTTGTCACTACCGTCTATGCCCAACGCCACATGGTCAAACCGCTGTCTGTTTGTGGATTATCCTTCGCCCCCTTCTCTGATGGCTACGACGATGGCATTGATCCCTCATCGTCCATTGAGCTTCCAGGACTGGAGCCACTGTTCACTAGCCGAGACCTTCCCTCTTTTCTACTGTCTTCAAATAAATTGACTTTTGTTCTCGAATCGTTTCAAAACAATTTCGAAGCACTTAGCCAAGATGAAAACCCTAAAGTACTGCTAAACACCTTTGATGCATTAGAGCCCAAGGCTTTGCGGGCCTTGGACAAGCTTAAATTGATTGGAATTGGCCCCTTGATTCCATCTGCTTTCTTGGATGCAAAAGATCCAACTGATATTTCTTTCGGAGGTGACCGATTTCAAGGTTCCACTGACTACATAGAATGGTTGAACTCCAAGCCCAAATCATCAGTCATTTACATATCCTTTGGGAGCTTAGCTATTTTGTCAAAGCCGCAAATGGAGGAGATTGCCTGTGGTCTGCTAAATAGTGACCGACCTTTTTTGTGGGTCATAAGAGAACCCGATAAGGGAGAAAGCATGGTTTGTGGGGTTCCGGTTGTGGCATTTCCCCAAGGGACGGATCAAGCCACCACCGCAAAGCTGATCACGGACATGTGGAAAACTGGCATTCGGGTGTGGGTGAATGAAGAAGGAATGGTTGAACGTGATGAGATAAAGATGTGCTTGGAAATTGTTATGGGAGATGGAGAAAGAGCAGAAGGATTGAGAAGGAATGCTGAGAAATGGAAGGAGTTGGCGAGGGAAGCTATGAAGAATGGTGGAATGTCGGACAATAATCTCAAGGCTTTTGTGGATGAAGTTGGACAAAAATTGTAA 984 46.44 MAPPHFLLVSYPAQGHINPTLRLAKRLIQTGAQVTFVTTVYAQRHMVKPLSVCGLSFAPFSDGYDDGIDPSSSIELPGLEPLFTSRDLPSFLLSSNKLTFVLESFQNNFEALSQDENPKVLLNTFDALEPKALRALDKLKLIGIGPLIPSAFLDAKDPTDISFGGDRFQGSTDYIEWLNSKPKSSVIYISFGSLAILSKPQMEEIACGLLNSDRPFLWVIREPDKGESMVCGVPVVAFPQGTDQATTAKLITDMWKTGIRVWVNEEGMVERDEIKMCLEIVMGDGERAEGLRRNAEKWKELAREAMKNGGMSDNNLKAFVDEVGQKL* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18760945 18763626 - Vvi5g1048 Vvi5g1048 787190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1048 327 Gene3D Glycogen Phosphorylase B; 305 316 - -
Vvi5g1048 327 Gene3D Glycogen Phosphorylase B; 1 72 - -
Vvi5g1048 327 Gene3D Glycogen Phosphorylase B; 75 156 - -
Vvi5g1048 327 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 70 224 - -
Vvi5g1048 327 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 323 - -
Vvi5g1048 327 Gene3D Glycogen Phosphorylase B; 227 304 - -
Vvi5g1048 327 Gene3D Glycogen Phosphorylase B; 162 225 - -
Vvi5g1048 327 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 227 322 - -
Vvi5g1048 327 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 4 66 - -
Vvi5g1048 327 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 70 224 - -
Vvi5g1048 327 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 227 322 - -
Vvi5g1048 327 Coils Coil 288 308 - -
Vvi5g1048 327 CDD GT1_Gtf-like 4 305 IPR002213 GO:0008194
Vvi5g1048 327 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 4 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1048 - - K21371 vvi:100263517 499.975
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1048 . . . . Bpe04g00937 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00473 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63