Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1055 ATGAAATTCCTTTCTACCTATTCCCTACACGTTTGCAGCCATCCGCCCATACCTAAGCCTCTATCGGACCTCTCGGTTATCTTTTTCATCTCTATGATTGCATGGCCTGCTTACCATGCTCCATTATGGGGAGAGATTAATGGAGGGATGGTTGTCGAAGTGAATGAAATTGATGGAGCTATGGAGGTGAATGAGGATAAGCACCTTTTTCATGGAAATAGGTTCAGATCATCTAAGAAAGATGCTTTGAAAACACCCAGAAAGTGTGAACAGAAGAAAGGTTATGAATTTTTGTTCATGGTTGACACCATTGATGAGTATGTAGTGGGGCACTTGAAAGAGTTTGAGGGGAAGAAGCTTGTCCCTGCAACCAATGAGGGACTCAAATTTGATGAGATGGATTTCCCATGCTGCTTAGTCACAGGAGAGTATGGTTGGGTTGCAAACATGGAGAGGATCATGAAGGCCCAGACACTTAGAAACTCCAACATGGCTGGTTACATGTCCAACACCTTCTCCATCAAACCCAAATCTCATCATTGCTTGGAATTCAAGGCAGCTTCAAGTGCACTTCCAGCCCCACCTTGGTACTCTTCATACCCCACTTTTGCACCCGGGCCCACGCCTTGCATGGCCACCTTTGGCTTGCAATCCCAACTATGGCAACTCATTTTTTTTATTTCTTCATATTTTAATATCAAAATTATTTTCCAACATTCCAATTTTTAA 729 42.94 MKFLSTYSLHVCSHPPIPKPLSDLSVIFFISMIAWPAYHAPLWGEINGGMVVEVNEIDGAMEVNEDKHLFHGNRFRSSKKDALKTPRKCEQKKGYEFLFMVDTIDEYVVGHLKEFEGKKLVPATNEGLKFDEMDFPCCLVTGEYGWVANMERIMKAQTLRNSNMAGYMSNTFSIKPKSHHCLEFKAASSALPAPPWYSSYPTFAPGPTPCMATFGLQSQLWQLIFFISSYFNIKIIFQHSNF* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18925517 18926513 - Vvi5g1055 Vvi5g1055 787197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1055 242 Gene3D - 134 189 IPR037196 -
Vvi5g1055 242 Gene3D - 61 133 - -
Vvi5g1055 242 Pfam Hsp90 protein 91 133 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi5g1055 242 Pfam Hsp90 protein 134 179 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi5g1055 242 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 133 177 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi5g1055 242 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 91 133 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi5g1055 242 PANTHER HEAT SHOCK PROTEIN 81-2 133 177 - -
Vvi5g1055 242 PANTHER HEAT SHOCK PROTEIN 81-2 91 133 - -
Vvi5g1055 242 SUPERFAMILY HSP90 C-terminal domain 133 178 IPR037196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1055 K04079 HSP90A, htpG; molecular chaperone HtpG - pda:103722381 122.864
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1