Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1059 ATGGACAACCTCCGCAAGGGCCTCAGCTCCACCCCCTCCGGCTGGACCGGCAGCGATTTCTGCAGCTGGGAAGGCATCAACTGCGGCAATACCGGCGATAGCAACGGCCGCGTCACCGCCATCAACATGGCTTCCAAGGGTCTCTCCGGCACTCTCCCTTCCGATCTCAACCAGCTCTCTCAACTCGTGACCTTGTCGTTTCAGTCTAACTCTCTCTCTGGTTCCTTGCCCTCTCTCGCTAACCTCCAGTTTCTTCAAGATATCTACCTCAACAGCAACAATTTCACCTCCATCGACAAGGATTTCTTCACCAATCTGACGAGTTTGCAGACTGTGAGCCTCGGCGAGAACCCCGATCTGGCGCCGTGGTCGATCCCAGATGGGTTGAGCCAGTCCAAGAGTCTGGCTATCTTCTATGCTAGCAATGCTAACATTGAAGGGTCCATACCAGATTGGTTCGGTTCGATGCCGAGTCTCAACGAACTGAGGCTGTCCTACAACAATCTCAATGGGTCTCTTCCATCTTCTCTGCCTGGGACCAGCATCCAAAAGCTGTGGATGAATAATCAGCAAAGTGGGCTTTCGGGCACGATCGATGTGTTGGCAGCCATGCCCGATCTAAGACAAGTGTGGCTGCAAGCGAATGCCTTCACTGGGCCCATCCCGGACCTGTCAAATTGCACCCAGTTGTTTGATTTGCAGCTTCGGGACAATCAGTTCACTGGTATTGTGCCTTCTTCGTTGACAAGTTTACCTAAATTGGTTAACATTACTTTGAAAAACAACAAATTACAAGGTCCTGTACCCGAGTTTTCTACTGGTGTTAACGTCGAACTAGATAATAATAAGTTTTGTAGGACGTCTGTTGGACCTTGTGATAGTCAGGTTACTACATTGCTTGAGGTTGCTGGGGCTTTAGGGTATCCTACAACCTTGGCTGACTCCTGGGAAGGGAACGATGCGTGCAACCAATGGGCGTTTATTTCATGTGATACGCAGGGGAAGAATGTGACTATTGTGAATTTTGCAAAACGGGGTTTTACGGGTACAATTTCACCAGCCTTTGCAAACCTCACATCTCTGCGGAATTTGTACTTGAACGATAATAAACTTACGGGTTCTATTCCAGAGAGCTTGACTAGTTTGACTCAGCTTCAGGTTCTTGATGTGTCAAATAATAATCTTACTGGGGGCATACCGAAATTTGGAGATGGGGTGAAGGTAACTACGACAGGCAATCTCTTACTTGGAAACGGTACAGACTCTGGAAGTGGAGATTCTCCATCTTCTGGTACCGATACTACCTCACCAAGTGGTACTCCGGCTGGGTCGCCTAATGGTTCAACCCCTTCAGCTGGTGTAATTGCTGCTATAGTTGTTGCTGTTGTCATTTTTATTGGGGTTGTGTTATTTGTGTCTTACAAATGTTACGTTAGGAAACAGCATAAGAAATTTGGCAGGGTGGACAATCCTGAAAATGGGAAGGAAATGGTGGTCAATAAGGTAATGGGAGGAATGGGTGGGTATGGTGGAGTCCCAAGTGAATTACACAGCCAGAGTAGTGGTGATCATAGTGACATTCCAGTGTTTGAAGGTGGAAATATTGCAATTTCAATCCAAGTTCTTCGACAGGTGACTAACAACTTTAGTGAAGATAATATATTGGGCAGAGGAGGGTTCGGTGTTGTTTACAAAGGCGAGTTGCATGATGGGACAAAGATTGCCGTGAAAAGGATGGAATCGGCAGCAGTGGGCACCAAAGGAATGAATGAGTTTCAGGCAGAGATTGCAGTTCTTACAAAAGTTAGGCACAGACATTTGGTTGCTCTGCTAGGTTTCTGTGTCAATGGTAATGAGAGGCTTTTGGTATATGAATACATGCCGCAGGGGACACTAGGACAGCATTTGTTTGATTGGCGTGAAAATGGGTACCCACCTTTGACTTGGAAGCAAAGGGTGACAATTGCATTGGATGTAGGAAGAGGAGTGGAATACCTTCACAGCTTAGCACAACAGAGTTTCATTCATAGAGATTTGAAACCATCCAACATACTTCTTGGAGATGACATGAGAGCTAAGGTTGCCGATTTTGGGTTGGTTAAAAATGCACCTGATGGGAAGTATTCTGTGGAGACACGGTTGGCTGGAACATTTGGATATCTTGCTCCTGAATATGCTGCTACTGGAAGAGTGACAACCAAGGTCGATGTTTATGCATTTGGAGTGGTATTGATGGAGCTGATCACTGGTAGAAAAGCTCTAGATGAGACCATGCCTGATGAAAGGTCTCATTTGGTGTCATGGTTCCGCAGGGTACTAATCAACAAGGACAACCTCCAAAAGGCTATTGACCAAACTCTAGACCCTGATGAAGAGACCTTAGCAAGCATCTGCAAGGTGGCTGAGCTGGCTGGCCATTGCACTGCTCGCGAACCATATCAGAGACCCGAGATGGGCCATGCAGTTAACATCTTGGGACCTCTCGTAGAGCAGTGGAAGCCTGTTCGCCCTGATGAAGATGAAAGCTATGGCATTGATCTCCACATGAGCCTTCCTCAAGCCCTTCAAAGATGGCAAGCAGATGAAGGTACTTCCACGATGGTTAATGATCTTTCCTACAGCCGAACCCAGTCAAGCATTCCATCAAAACCTTCTGGATTTGCTGATACATTTGATTCAATGGATTGCCGGTGA 2694 46.92 MDNLRKGLSSTPSGWTGSDFCSWEGINCGNTGDSNGRVTAINMASKGLSGTLPSDLNQLSQLVTLSFQSNSLSGSLPSLANLQFLQDIYLNSNNFTSIDKDFFTNLTSLQTVSLGENPDLAPWSIPDGLSQSKSLAIFYASNANIEGSIPDWFGSMPSLNELRLSYNNLNGSLPSSLPGTSIQKLWMNNQQSGLSGTIDVLAAMPDLRQVWLQANAFTGPIPDLSNCTQLFDLQLRDNQFTGIVPSSLTSLPKLVNITLKNNKLQGPVPEFSTGVNVELDNNKFCRTSVGPCDSQVTTLLEVAGALGYPTTLADSWEGNDACNQWAFISCDTQGKNVTIVNFAKRGFTGTISPAFANLTSLRNLYLNDNKLTGSIPESLTSLTQLQVLDVSNNNLTGGIPKFGDGVKVTTTGNLLLGNGTDSGSGDSPSSGTDTTSPSGTPAGSPNGSTPSAGVIAAIVVAVVIFIGVVLFVSYKCYVRKQHKKFGRVDNPENGKEMVVNKVMGGMGGYGGVPSELHSQSSGDHSDIPVFEGGNIAISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESAAVGTKGMNEFQAEIAVLTKVRHRHLVALLGFCVNGNERLLVYEYMPQGTLGQHLFDWRENGYPPLTWKQRVTIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDETMPDERSHLVSWFRRVLINKDNLQKAIDQTLDPDEETLASICKVAELAGHCTAREPYQRPEMGHAVNILGPLVEQWKPVRPDEDESYGIDLHMSLPQALQRWQADEGTSTMVNDLSYSRTQSSIPSKPSGFADTFDSMDCR* 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19047736 19052175 + Vvi5g1059 Vvi5g1059 787201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1059 897 Pfam Protein tyrosine and serine/threonine kinase 552 823 IPR001245 GO:0004672|GO:0006468
Vvi5g1059 897 CDD STKc_IRAK 555 828 - -
Vvi5g1059 897 MobiDBLite consensus disorder prediction 417 448 - -
Vvi5g1059 897 SUPERFAMILY Protein kinase-like (PK-like) 523 825 IPR011009 -
Vvi5g1059 897 Gene3D Transferase(Phosphotransferase) domain 1 627 843 - -
Vvi5g1059 897 Gene3D Phosphorylase Kinase; domain 1 513 626 - -
Vvi5g1059 897 SUPERFAMILY L domain-like 18 273 - -
Vvi5g1059 897 SMART LRR_typ_2 82 105 IPR003591 -
Vvi5g1059 897 SMART LRR_typ_2 382 405 IPR003591 -
Vvi5g1059 897 SMART LRR_typ_2 358 381 IPR003591 -
Vvi5g1059 897 SMART LRR_typ_2 156 184 IPR003591 -
Vvi5g1059 897 SMART serkin_6 549 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1059 897 Pfam Leucine rich repeat 354 395 IPR001611 GO:0005515
Vvi5g1059 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 674 686 IPR008271 GO:0004672|GO:0006468
Vvi5g1059 897 MobiDBLite consensus disorder prediction 874 897 - -
Vvi5g1059 897 Gene3D Ribonuclease Inhibitor 3 292 IPR032675 -
Vvi5g1059 897 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 1 897 - -
Vvi5g1059 897 SUPERFAMILY L domain-like 294 401 - -
Vvi5g1059 897 ProSiteProfiles Protein kinase domain profile. 549 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1059 897 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524
Vvi5g1059 897 PANTHER OSJNBA0070M12.3 PROTEIN 1 897 - -
Vvi5g1059 897 Gene3D Ribonuclease Inhibitor 293 418 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1059 - - - vvi:100265293 1686.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004008 3 1 2 2 2 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 2 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76643 PF07714 PK_Tyr_Ser-Thr 2.60E-46 CL0016 Vvi PK