Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1061 ATGGAGAAAGAGGAGAACAAGGATGGCGAACCAACCCGTGAATGTGATGACTCAGAGAAGCCTGACGATGAGGGTCGTGAAGATGATGAGGATGATGAGGCGGAAGAGGATGGCAAGCCCAAATCTGAGAAAGAGTTGGAGAATAAAGAATTGGAACTTGGTCCTCAGGTCTCTCTTAAGGAGCAGCTTGAGAAAGATAAGGATGACGAAAGTTTGAGAAGATGGAAGGAGCAGCTTCTTGGCACTGTTGATTTCTCTGCTGTTGGAGAGAGTAATGAGCCTGAGGTTCGAATACAAAGCCTCTCAATCCTGTGTAAGGACCGCCCTGATCTGGTGTTTGCAATTCCATTAGCTGCCAATTCCAAGGACCGTCTCTTCACCCTCAAGGAAGGAAGCCGATACCACCTCAAGTTCTCCTTTGTCGTCTCTAACAACATCGTCTCCGGCCTTAAATATATACACACTGTCTGGAAGACTGGTATTAAAGTGGACAATACAAGAATAATGCTGGGAACTTTCAGTCCACAACAAGAGCCATATACTTATGAGTTGGAAGAAGAAACTACTCCTTCAGGCATGTTCGCAAGGGGTTCATATTCTGCAAGAAGCAAGTTTATAGATGATGATAGAAAATGCTATTTGGATTTCAGTTACACCTTTGACATTCAAAAAAACTGGCCATCAGCCTCTTGA 693 44.3 MEKEENKDGEPTRECDDSEKPDDEGREDDEDDEAEEDGKPKSEKELENKELELGPQVSLKEQLEKDKDDESLRRWKEQLLGTVDFSAVGESNEPEVRIQSLSILCKDRPDLVFAIPLAANSKDRLFTLKEGSRYHLKFSFVVSNNIVSGLKYIHTVWKTGIKVDNTRIMLGTFSPQQEPYTYELEEETTPSGMFARGSYSARSKFIDDDRKCYLDFSYTFDIQKNWPSAS* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19076701 19078272 + Vvi5g1061 Vvi5g1061 787203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1061 230 MobiDBLite consensus disorder prediction 1 67 - -
Vvi5g1061 230 PANTHER RHO GDP-DISSOCIATION INHIBITOR 5 228 IPR000406 GO:0005094|GO:0005737
Vvi5g1061 230 MobiDBLite consensus disorder prediction 37 51 - -
Vvi5g1061 230 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g1061 230 Gene3D Coagulation Factor XIII, subunit A, domain 1 48 228 IPR024792 -
Vvi5g1061 230 SUPERFAMILY E set domains 40 227 IPR014756 -
Vvi5g1061 230 MobiDBLite consensus disorder prediction 21 36 - -
Vvi5g1061 230 PRINTS RHO protein GDP dissociation inhibitor signature 86 101 IPR000406 GO:0005094|GO:0005737
Vvi5g1061 230 PRINTS RHO protein GDP dissociation inhibitor signature 146 162 IPR000406 GO:0005094|GO:0005737
Vvi5g1061 230 PRINTS RHO protein GDP dissociation inhibitor signature 163 178 IPR000406 GO:0005094|GO:0005737
Vvi5g1061 230 PRINTS RHO protein GDP dissociation inhibitor signature 205 222 IPR000406 GO:0005094|GO:0005737
Vvi5g1061 230 Pfam RHO protein GDP dissociation inhibitor 41 225 IPR000406 GO:0005094|GO:0005737
Vvi5g1061 230 PANTHER OS01G0913600 PROTEIN 5 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1061 K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor - vvi:100260088 410.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00750 . . . . . . . . . . . . . . . . . . Cla07g01471 Cam07g1571 Cec07g1670 Cco07g1631 Clacu07g1562 Cmu07g1530 Cre07g1906 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012234 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29