Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1065 ATGGCGGACTTCGCTCGAGAAAGGGACTGGGAGAAGTTCCACAGCCCCAGAAATCTTCTTCTGGCTCTGGTTGGAGAAGTAGGGGAGTTGTCTGAGATATTTCAGTGGAAAGGAGAGGTCCCCAAAGGCCTGCCGGATTGGAAAGAAGAAGAGAAGCTTCATTTGGGTGAAGAGCTCTCAGATGTGTTGCTGTACCTTGTGAGGCTGTCTGACATATGTGGTGTTGATCTGGGAAAAGCTGCCCTGAGGAAGCTGGAGCTCAATGCCAAGAAATACCCAGTCAAGCTCTGCAAGGGCTCTTCCAAAAAGCACACCCAAATCAACTCAAAATCAAACTCAGTCACCGACAAGAATGGTAGTATTCGAAAGAACAGCAACAGTAGTGGCAGCAGCGAGTGCTAA 402 49.0 MADFARERDWEKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKLHLGEELSDVLLYLVRLSDICGVDLGKAALRKLELNAKKYPVKLCKGSSKKHTQINSKSNSVTDKNGSIRKNSNSSGSSEC* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19191450 19193008 - Vvi5g1065 Vvi5g1065 787207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1065 133 Gene3D - 1 98 - -
Vvi5g1065 133 PANTHER - 1 113 - -
Vvi5g1065 133 MobiDBLite consensus disorder prediction 97 133 - -
Vvi5g1065 133 PANTHER DCTP PYROPHOSPHATASE 1 1 113 - -
Vvi5g1065 133 SUPERFAMILY all-alpha NTP pyrophosphatases 2 106 - -
Vvi5g1065 133 CDD NTP-PPase_RS21-C6_like 1 88 IPR025984 GO:0009143|GO:0047429
Vvi5g1065 133 Pfam MazG-like family 26 105 IPR025984 GO:0009143|GO:0047429
Vvi5g1065 133 MobiDBLite consensus disorder prediction 101 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1065 K16904 DCTPP1; dCTP diphosphatase [EC:3.6.1.12] - vvi:100266931 224.172
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1065 Blo01g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01074 . . . . . . . . . . . . . . . . . . . Cla07g01472 Cam07g1572 Cec07g1671 Cco07g1632 Clacu07g1563 Cmu07g1531 Cre07g1907 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002028 4 1 2 4 4 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 1 2 3 2 1 65