Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1066 ATGATCTTCAGTGGAGCTTCGGGATCAGTGACTGGCCTCTCAATCCTCTCAAAGCTCTTCTGCTGGGACTCCTCTTCCAACACCAACTCTTCTGCCTCTCTCCTCATAAATCCTTCCAAAATCTCCAGTTTCTACCGGAGATCTCCCTTGAGAAGGTCCCCATTCCATATTGCCACTGCCCGAGTCTCCACCGAGGGCTCCGAGCAGGCCACTGCCGGAGTCGTCGAAGGTTCGCCTCCTCCCCCTTTCGACGCCATTCGCCAAGCTCGGAGGTCTGCTGACTGGAAAGCAGCAAGGGCTCATCTTGAGAGTGGATTCATATACGAGGGTAGGATTGAAGGTTTTAATGGAGGAGGCTTACTGGTTCGGTTTTATTCTCTTGTGGGGTTTCTTCCCTTCCCACAGTTGAGTCCATCCCATTCATGTAAAGAACCCCATAAAACCATCCAAGAGATTGCAAAAGGATTGATTGGTTCTCTTATTTCCGTGAAGGTCATCCTAGCGGATGAGGAGAAAAGGAAATTGATTTTCTCTGAAAAGGAAGCTGCCTGGTTGAAATTTTCCAAACAAATTAATATAGGTGATATTTTTGAAGCAATGGTGGGTTCGGTCGAGGATTATGGTGCCTTTGTTCACTTACGCTTTCCCGATGGTCTTTATCACCTCACTGGACTAGTACATGTCTCTGAGGTTTCATGGGATTTAGTTCAAGATGTAAGAGACGTCCTAAACGAGGGTGATGAAGTGAGGGTTAAAATTGTTAAAGTAGATAGGGTAAAATCAAGGATTACATTGTCAATTAAACAACTGGAAGAAGATCCACTTTTAGAAACTTTAGACAAAGTAATTCCTCAGGATGGATCAACAGGTCCAGATTCTCTGAGGACAAGCGATAGCTATGACATCGAACCTCTTCCAGGGCTTGAAACAATATTTGAAGAGCTTCTCCAGGAAGAAGGGATAAGTGATGTAAGAATTAGTCGTCAAGGATTCGAGAAACGAGTAGTTTCACAAGACCTGCAGCTCTGGCTTTCAAATGCCCCAGCCGTTGACAAACAGTTCACCCTCCTTGCTCGAGCTGGAAGGCAGGTGCAAGAAATACAACTGACAACGTCACTTGATCAAGAAGGCATCAAAAAGGCATTACAGCGAGTACTGGAGCGTGTCCCGTGA 1173 45.87 MIFSGASGSVTGLSILSKLFCWDSSSNTNSSASLLINPSKISSFYRRSPLRRSPFHIATARVSTEGSEQATAGVVEGSPPPPFDAIRQARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHKTIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDYGAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVKSRITLSIKQLEEDPLLETLDKVIPQDGSTGPDSLRTSDSYDIEPLPGLETIFEELLQEEGISDVRISRQGFEKRVVSQDLQLWLSNAPAVDKQFTLLARAGRQVQEIQLTTSLDQEGIKKALQRVLERVP* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19249663 19262384 - Vvi5g1066 Vvi5g1066 787208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1066 390 ProSiteProfiles S1 domain profile. 105 180 IPR003029 GO:0003676
Vvi5g1066 390 SMART S1_6 192 268 IPR022967 -
Vvi5g1066 390 SMART S1_6 103 180 IPR022967 -
Vvi5g1066 390 Gene3D - 95 186 IPR012340 -
Vvi5g1066 390 SUPERFAMILY Nucleic acid-binding proteins 181 273 IPR012340 -
Vvi5g1066 390 Pfam S1 RNA binding domain 192 268 IPR003029 GO:0003676
Vvi5g1066 390 Gene3D - 187 270 IPR012340 -
Vvi5g1066 390 ProSiteProfiles S1 domain profile. 194 268 IPR003029 GO:0003676
Vvi5g1066 390 MobiDBLite consensus disorder prediction 62 81 - -
Vvi5g1066 390 SUPERFAMILY Nucleic acid-binding proteins 103 180 IPR012340 -
Vvi5g1066 390 PANTHER OS03G0844900 PROTEIN 31 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1066 - - - vvi:100244532 752.281
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0899 . . . . . . Blo07g00072 . . . . . . . . . . . . . . . . . . . . . . Cla07g01473 Cam07g1573 Cec07g1672 Cco07g1633 Clacu07g1564 Cmu07g1532 Cre07g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011616 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30