Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1067 ATGGCTTGGCTTCGTCAATCACTGGTTTTAGTAGCTCTTGGGTGTTTGTCACTGCTTCTGCAAATCCAAACGTCTCTTTCCCTCGCATGTTCTTCACAGAAGTTCACAAAAAACAGGCTTTACACCCACTGCAATGATCTCCCACACCTCAGCTCATACCTTCACTGGACATACAACTCAAATAAATCCTCCCTCAGCCTGGCTTTCATCGCCCCGCCAGCTTCATCTTCAGGGTGGATTGCATGGGCCATAAATCCTAATCAAACTGGGATGGTTGGTTCCCAGGCCTTGATAGCCTTCAAGGAGGATAGTGGATCAATGACTGTGAAGACCTACAATTTGGTGTCCTATAAGCTCATAAATCAGACTGAGATTGCATATGATGTTTCCGACATGGAGGCTGAGTATGAGAGCGGTGAGATGAGGATATTTGCCACGCTTGCGTTGCCGGAGAACACGCAGGAGCTGAACCAGGTCTGGCAGGTGGGTAGCAGAGTTGTGGATGGGAAGCCTTCCATCCATGGATTTCAGCCTGATAATTTGAACTCTAAGGGCAAGCTTGATTTGATTAAGGGACAGAGTGACACCAGCAGTGGAGGGAATTCTAGGCTTAGAAACAAAAATATCCATGGAGTATTGAACGCTGTAAGCTGGGGAATTATGCTTCCCATTGGAATGATGATAGCAAGATACCTGAGAACATTCAGGCTTTTCCATCCAGCATGGTTTTATCTCCATGTTTCATGCCAGGTATCTGCCTATGCTATCGGAGTTGCCGGCTGGGCTACTGGCCTTAAGCTTGGGGGTCAATCAAAGGGGGTCCAGTACACCACTCACCGTTATATTGGCATCACCCTCTTCAGTCTAGCCACCTTGCAGGTATTTGCATTGTTCTTGAGGCCAAAGAAAGATCACAAGTACAGGTTCTACTGGAACATTTACCATCATGGAATCGGGTACGCAATCGTAGTTCTGGGGATATTTAATGTGTTCAAAGGACTGGAAATCTTGGATCCACAGAAGAAGTGGAAGTCAGCATACATAATCTTGCTCATCATACTGGGGGGCATTGCTCTGTTTTTGGAAGTAATCACATGGATTGTGGTTGTGAAGAGGAAGTCCAGTGAGCCCAAAAAGGCCTATGATGGAATAATTGACAGTTCAAATGGAAGGCAGCAGCCTCTTACCAGCTAA 1194 46.31 MAWLRQSLVLVALGCLSLLLQIQTSLSLACSSQKFTKNRLYTHCNDLPHLSSYLHWTYNSNKSSLSLAFIAPPASSSGWIAWAINPNQTGMVGSQALIAFKEDSGSMTVKTYNLVSYKLINQTEIAYDVSDMEAEYESGEMRIFATLALPENTQELNQVWQVGSRVVDGKPSIHGFQPDNLNSKGKLDLIKGQSDTSSGGNSRLRNKNIHGVLNAVSWGIMLPIGMMIARYLRTFRLFHPAWFYLHVSCQVSAYAIGVAGWATGLKLGGQSKGVQYTTHRYIGITLFSLATLQVFALFLRPKKDHKYRFYWNIYHHGIGYAIVVLGIFNVFKGLEILDPQKKWKSAYIILLIILGGIALFLEVITWIVVVKRKSSEPKKAYDGIIDSSNGRQQPLTS* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19290438 19292702 - Vvi5g1067 Vvi5g1067 787209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1067 397 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 10 379 - -
Vvi5g1067 397 Gene3D - 189 378 - -
Vvi5g1067 397 Pfam Eukaryotic cytochrome b561 210 334 IPR006593 -
Vvi5g1067 397 PIRSF UCP037471 3 394 IPR017214 -
Vvi5g1067 397 ProSiteProfiles Cytochrome b561 domain profile. 170 370 IPR006593 -
Vvi5g1067 397 ProSiteProfiles DOMON domain profile. 50 163 IPR005018 -
Vvi5g1067 397 Pfam Protein of unknown function (DUF568) 91 189 IPR045265 -
Vvi5g1067 397 CDD DOMON_CIL1_like 41 189 IPR045265 -
Vvi5g1067 397 SMART 561_7 209 334 IPR006593 -
Vvi5g1067 397 CDD Cyt_b561_FRRS1_like 181 363 - -
Vvi5g1067 397 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 10 379 - -
Vvi5g1067 397 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1067 - - - vvi:100261667 783.482
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1297 Cone10ag1249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007680 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35