Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1068 ATGCTTTTAGGAGCAGGGTCGGGTTCACCCGCACAATTCAGTTTAGCCCAACTACACTCTACAGCCAGTTGGAAAGGAGGAAAAAACAAATCTATTTGCATTGATCCCGTAGTTCTGATTTTTTCTCATTTTCTGTTTGACATTTTGCAGGTGGCTGAGAAGCCCAGCATCGCTCTTTCTATCGCTTCCGCTCTCTCTGGTGGCCATATGTCTACCAGGCGGGGTGGTAGTAGTACAGAAGTCCATGAATTTAATGGAACCTTTCGTGGATCTAATGCACAATATAAGGTGACATCAGTTATCGGGCATGTTTTCAGTGTAGATTTTCCTGCAAAATATCAAGACTGGACGGTTACAGATCCTCTGGATCTTTTCCAAGCTCCAATTCTTAAGGCAGAATCAAACCCAAAGGCTCATATACGTAGGCATTTGAGTCAAGAAGCTCGTGATTGTGGTCATTTGGTTCTATGGTTGGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAAGTTGTTGAGTGCACTGGTTTTCATGGAAATGAGGCTAGAAGAAGAGTATATCGTGCACGGTTTTCTTCTGTTACCGAGAAAGACATTTTGAAGGCCATGGACAACCTTGTTGAGCCAAATGAGGATGAGGCTAGGGCTGTAGATGCTCGGCAAGAGATAGATTTAAAAGTTGGAGTAGCATTTACACGATTTCAAACTAGTTATTTCCAAGGAAAATATGGCAATCTTGACTCCAGAGTTATCTCATATGGTCCTTGTCAAACTCCTACTCTTGGCTTCTGTGTACAGCGCTACTTGCAAATTAATACTTTTAAGCCAGAGAAGTTTTGGGCCTTGCATCCTTATATCACACACAATGGCTATGAACTTCAGTTGGAATGGGAACGTAACAAGCTGTTTGACTTAGATGTTGCTGTCATGTTTCAAAACTTGGTAATGGAGGATGGAATTGTAGAAGTTACTGACATATCAGAAAAACAGGAAAGCAAAAGTCGACCTTCTGGTCTCAATACAGTTAATCTTCTGAAGGTTGCTTCAAGTGCATTAGGCTTTGGACCTCAAATGGCTATGCAATTAGCTGAACGCTTATATACTCAAGGTTTCATCAGCTATCCACGCACGGAGAGTACAGCTTATCCCTCTTCATTTGACTTTAAAAGCACACTTGGCATGCAAACAAATAATCCAACATGGGGTGATTATGTACAGAAACTACTGGATGATGGTTTTCATAGGCCACGATCAGGAACCGATGCTGGTGACCACCCTCCCATAACTCCAATGCGGGCAGCAAATGAGGATATGTTAGGCAATGATGCTTGGAAATTATACCAGTACGTCTGTCAACATTTTATAGGCACTGTATCCCCTGACTGCAAGTATGTAAGGAATAAGGTAGAATTTTCAATTGGTGGCGAAATCTTTCGCTGTATAGGGCAGCATGTTATAGTCAAAGGCTTTACATCTATTATGCCATGGCTGGCAGTAAATGAAAAAAATCTTCCTCAGTTTAAAAAGGGAGAAAAAATAGAAGTTTCAAAAGTTGAGCTCTATGAGGGGGAAACCAGTCCTCCAGATTATCTTAGTGAAAGTGAGCTGATATCCCTAATGGAGAAGAATGGGATAGGCACAGATGCATCCATTCCTGTGCATATTAACAACATATGTGAGCGCAACTTTGTGCAGGTGCAAGCTGGAAGGAAGTTGGTTCCAACTGCTTTGGGGATCAGCCTAATAAGAGGCTATCAGTGCATTGATCCAGATCTTTGTTTGCCAGACATTCGAAGTTTCATTGAGCAGCAGATCACTCTTGTTGCCAAGGGTCAAGTGGATCACTCTCGTGTGGTGGAGCATGTACTACAACAATTCAAGCAGAAGTTCATTTATTTTGTGAAGCAGATTGAAAACATGGATGCATTATTCGAAGCACAATTTTCCCCACTGGCTGATTCAGGACGTGCACTTAGTAAATGTGGCAAATGCCTGCGGTATATGAAGTACATTTCTACCCAACCATCACGTATGTATTGTGGCACATGTGAGGAGGTCTATTATCTTCCTCAAAAGGGCACAATCAAGCTGTACAAGGAACTCACATGCCCTTTAGACAACTTTGAGCTGTTAATCTTCTCCTTGGCTGGCCCAGAGGGCAAGTCATTCCCTCTCTGTCCATACTGCTACAACAGTCCTCCATTTGAAGCTGGAATGCCTTGCTTCCTTTGCCCACACCCCACATGCCCACATTCTCTGATAGCCCAAGGAGTCTGTGCCTGCCCAGAATGCAGTGGAACACTTGTTCTAGATCCAGTAAGTGCTCCCAAATGGAGGCTTTACTGCAATATGTGCAATTGCCTTGTCTACCTCCCTCAAGGCGCTCACAAAATTTCCACAACTCGGGACCGGTGTCCAGAATGTGAAGGAAGAGGATCAGGGAGAGGGGGATTTAGAGGAAGAGGACGAGGTGGGAAATGGGATGACCCCAAAATGAGCTTCAGAGACTTCTGA 2514 43.28 MLLGAGSGSPAQFSLAQLHSTASWKGGKNKSICIDPVVLIFSHFLFDILQVAEKPSIALSIASALSGGHMSTRRGGSSTEVHEFNGTFRGSNAQYKVTSVIGHVFSVDFPAKYQDWTVTDPLDLFQAPILKAESNPKAHIRRHLSQEARDCGHLVLWLDCDREGENICFEVVECTGFHGNEARRRVYRARFSSVTEKDILKAMDNLVEPNEDEARAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWALHPYITHNGYELQLEWERNKLFDLDVAVMFQNLVMEDGIVEVTDISEKQESKSRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKSTLGMQTNNPTWGDYVQKLLDDGFHRPRSGTDAGDHPPITPMRAANEDMLGNDAWKLYQYVCQHFIGTVSPDCKYVRNKVEFSIGGEIFRCIGQHVIVKGFTSIMPWLAVNEKNLPQFKKGEKIEVSKVELYEGETSPPDYLSESELISLMEKNGIGTDASIPVHINNICERNFVQVQAGRKLVPTALGISLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQVDHSRVVEHVLQQFKQKFIYFVKQIENMDALFEAQFSPLADSGRALSKCGKCLRYMKYISTQPSRMYCGTCEEVYYLPQKGTIKLYKELTCPLDNFELLIFSLAGPEGKSFPLCPYCYNSPPFEAGMPCFLCPHPTCPHSLIAQGVCACPECSGTLVLDPVSAPKWRLYCNMCNCLVYLPQGAHKISTTRDRCPECEGRGSGRGGFRGRGRGGKWDDPKMSFRDF* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19303219 19374596 - Vvi5g1068 Vvi5g1068 787210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1068 837 CDD TOPRIM_TopoIA_TopoIII 48 206 IPR034144 -
Vvi5g1068 837 Gene3D Topoisomerase I, domain 3 275 528 IPR013825 -
Vvi5g1068 837 PRINTS Prokaryotic DNA topoisomerase I signature 154 167 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 PRINTS Prokaryotic DNA topoisomerase I signature 251 269 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 PRINTS Prokaryotic DNA topoisomerase I signature 369 378 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 PRINTS Prokaryotic DNA topoisomerase I signature 446 462 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 PRINTS Prokaryotic DNA topoisomerase I signature 544 558 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 364 378 IPR023406 GO:0003917
Vvi5g1068 837 Gene3D Topoisomerase I, domain 2 216 630 IPR013824 -
Vvi5g1068 837 MobiDBLite consensus disorder prediction 810 837 - -
Vvi5g1068 837 Gene3D Topoisomerase I, domain 4 335 460 IPR013826 -
Vvi5g1068 837 ProSiteProfiles Toprim domain profile. 47 192 IPR006171 -
Vvi5g1068 837 PANTHER PROKARYOTIC DNA TOPOISOMERASE 47 817 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi5g1068 837 SMART toprim5 47 180 IPR006171 -
Vvi5g1068 837 SUPERFAMILY Prokaryotic type I DNA topoisomerase 48 670 IPR023405 -
Vvi5g1068 837 Pfam Toprim domain 50 193 IPR006171 -
Vvi5g1068 837 SMART topIban2 185 281 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 PANTHER DNA TOPOISOMERASE 3-BETA-1 47 817 - -
Vvi5g1068 837 Pfam DNA topoisomerase 209 619 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 SMART topIaneu2 327 582 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 CDD TOP1Ac 211 630 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi5g1068 837 Gene3D - 40 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1068 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - vvi:100260076 1562.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1068 . . . . . . . . . . . Cma14g01522 . Car14g01348 . . Cpe03g01281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g01402 . . Cmo14g01558 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007510 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 5 1 36