Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1069 ATGCAAGCTCTCATCCGCAATACCTCAAAACTAAGAGCTCTAATCACAAATCAAGCCCTGGTGCTGAGATCCAATGCCCTCTTCTCTTCCTCCGCTTTTCCAGGTAGTAGGGATTTTGAGATGGGAAGGAATTCCAGGTCCATGAACTTTGTGAGGGGAATTATAGAACAGGACAGAAGGAATATTCCAGGATGTTTGTCGGAAATGAAAGGGGGACCTAAACTTTCTCGGTATGCAGCTGATGCAACTGCAGAACATGTTGGACGACTTGCAAGAAACCTTGGTTTGAAGTCGGTTGTAATGAAGGTGAAGGGGTTCACTTATTTCAAGAAGAAAAAACAAGCAATAATGAGCTGGAAGGAGGGCTTCAACTCTTCTCGAGGAGATGAAAATCCAATTATGTACATTGAAGATACAACTAGACGTCCACATAATGGATGCCGACTTCCAAGGAAACGCCGTGTTTGA 468 43.8 MQALIRNTSKLRALITNQALVLRSNALFSSSAFPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTYFKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19399773 19401611 + Vvi5g1069 Vvi5g1069 787211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1069 155 SUPERFAMILY Translational machinery components 68 155 - -
Vvi5g1069 155 Pfam Ribosomal protein S11 68 154 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi5g1069 155 PANTHER RIBOSOMAL PROTEIN S11, MITOCHONDRIAL-RELATED 64 155 - -
Vvi5g1069 155 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 64 155 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi5g1069 155 Gene3D Ribosomal protein S11 61 155 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1069 K02948 RP-S11, MRPS11, rpsK; small subunit ribosomal protein S11 - vvi:100256569 283.493
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .