Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1070 ATGGATTCTCTGCGTGTACTGCAGTGTTCCACCTCTGCGCAGTATCAGTACCATCTACGCAAGCAATTGGAATTCCCCCTCCAATGCCGAAGCAATTTCTTGAAGCCAAGAATCTCACATTCGTTTCGGAATTTAGGGTTTTTGAATCGTCGGATTCTTTGTGGTGTTTCCTCAGTTTTGACAAGAGAGGAAGAGAAGAAGATGAGGACGAGGACAGGGAGTGGGAAGGTTAAGCTAAGTATTCTACTGAAACACCAGGTTAAATTCGGAGAGCATGTTGTGATGTTGGGGTCCACGAAGGAATTGGGATCATGGAAGAAGAATGTGCCGATGAATTGGACAGAGAATGGATGGGTGTGTAAGTTGGAGTTGAGAGGAGATGAGTCAATTGAGTACAAATTCGTGATTGTGAAGAGGGACAAGAGCATGACATGGGAAGGTGCAAATAACAGGGTTTTGAAGCTGCCTAAGGGAGGGAGTTTTGGGGTAGTTTGTCTATGGAATGCAACCGGGGAGGCTGTGGACTTATTACCTCTGGATTCGGAGAAGGATGAGGTAGAATTTGATCATATGGATGAAATTGGATCTGCTGTTGTTGATAGTGCTTCTGTTTTGGAAGTTCAGACAAGTCCTTTTGTTGAGCAGTGGCAAGGCAGGTCAGTTTCATTCATGCGATCAAATGAGCACCGCAACCAAGAAACAGAACGGAGATGGGACACTTCAGGTCTTGAAGGGTTGGCTCGGAAGTTAGTTGAAGGAGATCGAAATGCCAGAAATTGGTGGCAAAAGCTTGAAGTTGTACGTGAGCTTTTAGTTGGAAATCTGGAAAGTGGAGACCGGTTGGAAGCTCTCATTTTTTCTGCCATCTATCTAAAGTGGATCAACACAGGGCAAATACCTTGCTTTGAAGGTGGTGGTCATCACCGTCCAAACAGGCATGCTGAAATTTCCAGGCTTATATTTCGTGAATTGGAAAGAATTTCTTGTATGAAAGATACTTCACCGCAGGAAGTACTTGTCATTCGCAAGATTCATCCATGTTTGCCATCTTTTAAGGCAGAATTTACTGCATCTGTTCCCCTGACTCGAATTAGAGATATTGCTCATCGGGGTGATATCCCTCATGATCTCAAGCAAGAAATCAAGCACACAATACAAAACAAGCTCCACCGAAATGCTGGCCCAGAAGATTTGGTTGCTACAGACGCAATGCTTGCAAGAATTACTAGGAACCCTGGAGAATATAGTGAAACATTTGTAGAACAATTCAAGATATTTCATCACGAACTCAAAGATTTTTTCAATGCTGGAAACCTTACTGAACAACTTGAATCAATAAAAGAATCTTTTGATGACCGAAGCTCATCAGCCCTTACATTATTTTTGGAGTGCAAGGAGAGATTGGATAATTTGGAAGAATCAAGTAATGCTTTGGATAAAAGCATTGATTTGCTGCTCAAAACTGCACAATCTTTGAATGCTCTTAGAGAAGTAATTGTGAAGGGTCTTGAAAGTGGTCTCAGAAATGATGCCCCTGATGCTGCAATAGCAATGCGTCAAAAGTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAGATTTCTCAATGCACTTGAAGCTGTTGGAGGGGCTCAACAACTCAAGGAGAATGCAGAATCAAAGAATGTAAGCTCTTGGAATGATCCACTTGGTGCCCTTTTTATTGGAATCAGTCAGCTGGGGCTATCTGGTTGGAAGCCAGAAGAATGTACTGCTATTGGAAATGAACTCCTTGCATGGAAAGAGAAAGGTCTTTCTGAAAGAGAAGGCAGTGAAGATGGGAAGGCTATTTGGGCATTAAGGCTCAAAGCTACTCTTGATAGATCAAGGAGGCTGACTGAAGAATATTCTGAAGTACTTCTTCAGATGTTCCCTCAAAAAGTTGAGATGCTAGGAAAAGCTCTTGGGATACCAGAAAACAGTGTGAGGACATATACTGAAGCTGAAATTCGTGCTGGTGTAATTTTTCAGGTCTCAAAACTTTGTACGCTTCTTTTAAAAGCTGTTAGAAGCACACTTGGGTCACAAGGTTGGGACGTTATTGTTCCAGGAGCTGCTCATGGAACCCTAGTCCAGGTTGAGAGCATTATCCCAGGTTCACTGCCATCATCTGTCACTGGACCTGTCATTCTTGTGGTGAACAGAGCAGATGGAGATGAAGAGGTAACAGCTGCAGGGAGTAACATAATGGGAGTGGTCCTTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGGAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATACAAAAACTCAATGGAAAATGTGTGAGGTTAGAAGCCTCCTCAGCAGGAGTTAATATATTTCTGTCTTTGTCGGATAATAGCACTGGAGATTTCCCTGGGAAAGATCTTTCAGGTAATGGTTCATCGACAGTTGAAGCCCCAAAGGTTAATAATTCTTCCTGGTCTACAGACATAGCCTCAGGCTCTACTCAGGGTAATCATACACAAGTAGTTGTACAGCTTGCTGATGCAGACACACAAACTTCTGGTGCAAAGGCTGCTGCTTGCGGTCGCCTGGCTTCTTTGGGTGCAGTTTCTGATAAAGTTTACAGTGACCAAGGGGTGCCTGCTTCATTTAAGGTTCCTACAGGTGCAGTGATTCCTTTTGGATCCATGGAACTGGCACTGGAGCAAAGCAAGTCAATTGAAGCCTTCGTGTCTCTTGTAGAGAAGATAGAAACGGCCACTATGGAAAGTGGTGATCTTGACAAACTATGCTGTCAGCTCCAGGAACTGATATCTTCCCTGCAGCCCTCAAAAGAAATCATCCAACAGTTGGAGGAAATATTTCCAACAAATGCACGTCTAATTGTTCGTTCAAGTGCTAATGTCGAGGATTTGGCGGGAATCCGACGAGCTGCTGGAGTGGCACAGAAGGACGCTACAATGGCAGTCCTGGTCCAGGAATTGCTTTCACCAGATCTGTCCTTTGTGCTCCATACGCTCAGCCCAACAGACCATGATCATAATTCCGTTGAGGCAGAGATTGCTCCTGGTCTTGGTGAAACCCTGGCTTCAGGCACCCGGGGCACTCCATGGCGCCTTTCATCTGGAAAATTTGATGGGCTAGTCCGTACGCTGGCATTCGCAAATTTCAGTGAGGAGCTGTTGGTACTTGGTGCAGGACCTGCTGATGGAGAGGTTATCCGCTTAACAGTAGATTACAGCAAGAAACCTATGACAATTGACCCAATCTTTCGCAGGCAGCTTGGTCAGCGTCTTGGCGCTGTTGGCTTCTTCCTTGAGCGCAAGTTCGGTTGCCCACAGGACGTGGAAGGGTGTGTAGTTGGAAAAGACATCTTCATTGTCCAAACTCGCCCCCAACCCCAGTAA 3450 44.67 MDSLRVLQCSTSAQYQYHLRKQLEFPLQCRSNFLKPRISHSFRNLGFLNRRILCGVSSVLTREEEKKMRTRTGSGKVKLSILLKHQVKFGEHVVMLGSTKELGSWKKNVPMNWTENGWVCKLELRGDESIEYKFVIVKRDKSMTWEGANNRVLKLPKGGSFGVVCLWNATGEAVDLLPLDSEKDEVEFDHMDEIGSAVVDSASVLEVQTSPFVEQWQGRSVSFMRSNEHRNQETERRWDTSGLEGLARKLVEGDRNARNWWQKLEVVRELLVGNLESGDRLEALIFSAIYLKWINTGQIPCFEGGGHHRPNRHAEISRLIFRELERISCMKDTSPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRGDIPHDLKQEIKHTIQNKLHRNAGPEDLVATDAMLARITRNPGEYSETFVEQFKIFHHELKDFFNAGNLTEQLESIKESFDDRSSSALTLFLECKERLDNLEESSNALDKSIDLLLKTAQSLNALREVIVKGLESGLRNDAPDAAIAMRQKWRLCEIGLEDYSFVLLSRFLNALEAVGGAQQLKENAESKNVSSWNDPLGALFIGISQLGLSGWKPEECTAIGNELLAWKEKGLSEREGSEDGKAIWALRLKATLDRSRRLTEEYSEVLLQMFPQKVEMLGKALGIPENSVRTYTEAEIRAGVIFQVSKLCTLLLKAVRSTLGSQGWDVIVPGAAHGTLVQVESIIPGSLPSSVTGPVILVVNRADGDEEVTAAGSNIMGVVLLQELPHLSHLGVRARQEKVVFVTCEDDDKIADIQKLNGKCVRLEASSAGVNIFLSLSDNSTGDFPGKDLSGNGSSTVEAPKVNNSSWSTDIASGSTQGNHTQVVVQLADADTQTSGAKAAACGRLASLGAVSDKVYSDQGVPASFKVPTGAVIPFGSMELALEQSKSIEAFVSLVEKIETATMESGDLDKLCCQLQELISSLQPSKEIIQQLEEIFPTNARLIVRSSANVEDLAGIRRAAGVAQKDATMAVLVQELLSPDLSFVLHTLSPTDHDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTLAFANFSEELLVLGAGPADGEVIRLTVDYSKKPMTIDPIFRRQLGQRLGAVGFFLERKFGCPQDVEGCVVGKDIFIVQTRPQPQ* 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19402090 19438833 - Vvi5g1070 Vvi5g1070 787212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1070 1149 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 990 1149 - -
Vvi5g1070 1149 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 49 989 - -
Vvi5g1070 1149 Pfam Starch binding domain 82 160 IPR002044 GO:2001070
Vvi5g1070 1149 SMART CBM_20_2 76 165 IPR002044 GO:2001070
Vvi5g1070 1149 Gene3D - 845 994 IPR013815 GO:0005524
Vvi5g1070 1149 Gene3D Immunoglobulins 74 168 IPR013783 -
Vvi5g1070 1149 SUPERFAMILY Starch-binding domain-like 74 168 IPR013784 GO:0030246
Vvi5g1070 1149 MobiDBLite consensus disorder prediction 817 847 - -
Vvi5g1070 1149 CDD CBM20_water_dikinase 76 167 IPR034848 GO:2001070
Vvi5g1070 1149 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 990 1147 IPR002192 GO:0005524|GO:0016301|GO:0016310
Vvi5g1070 1149 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 862 1147 - -
Vvi5g1070 1149 Gene3D - 1011 1147 - -
Vvi5g1070 1149 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 71 169 IPR002044 GO:2001070
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1070 K15535 PWD; phosphoglucan, water dikinase [EC:2.7.9.5] - vvi:100256560 2248.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0897 . . . . . Blo02g00408 Blo07g00074 . Bda13g00296 . Bpe13g00749 Bma02g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42